Variant report

Variant	rs67962220
Chromosome Location	chr15:74188926-74188927
allele	A/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs11632590	0.82[ASN][1000 genomes]
rs11639394	0.82[ASN][1000 genomes]
rs11855322	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12902040	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12906932	0.82[ASN][1000 genomes]
rs12914489	1.00[ASN][1000 genomes]
rs2123209	0.90[ASN][1000 genomes]
rs34432278	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs35192808	0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs35196094	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs35697698	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35737351	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs55736920	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs55841941	0.90[ASN][1000 genomes]
rs56047016	0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1043335	chr15:74078689-74241186	Weak transcription Flanking Active TSS Strong transcription Enhancers Bivalent Enhancer Genic enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:74186800-74190000	Weak transcription	H1 Cell Line	embryonic stem cell
2	chr15:74187200-74192600	Weak transcription	Spleen	Spleen
3	chr15:74187800-74189800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr15:74188200-74190200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr15:74188200-74191600	Weak transcription	Cortex derived primary cultured neurospheres	brain
6	chr15:74188200-74191600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr15:74188200-74191600	Weak transcription	Fetal Brain Male	brain
8	chr15:74188400-74190200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr15:74188400-74191600	Weak transcription	Fetal Brain Female	brain
10	chr15:74188600-74191400	Weak transcription	Brain Germinal Matrix	brain
11	chr15:74188800-74204000	Weak transcription	Right Atrium	heart

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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