Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:74185254..74189144-chr15:74189847..74193524,3	K562	blood:

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs11632590	0.82[ASN][1000 genomes]
rs11633601	0.91[AMR][1000 genomes]
rs11636136	1.00[CHB][hapmap]
rs11639394	0.91[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs11854314	0.83[AMR][1000 genomes]
rs12900404	0.91[AMR][1000 genomes]
rs12902040	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs12906932	0.91[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs2123209	0.91[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs35192808	0.90[ASN][1000 genomes]
rs35697698	1.00[ASN][1000 genomes]
rs4272992	1.00[CHB][hapmap]
rs4886717	1.00[CHB][hapmap]
rs55841941	0.90[ASN][1000 genomes]
rs56047016	0.90[ASN][1000 genomes]
rs62004649	0.83[AMR][1000 genomes]
rs62004865	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs62004866	0.81[EUR][1000 genomes]
rs66610605	0.91[AMR][1000 genomes]
rs67962220	1.00[ASN][1000 genomes]
rs7163502	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1043335	chr15:74078689-74241186	Weak transcription Flanking Active TSS Strong transcription Enhancers Bivalent Enhancer Genic enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs12914489	PML	cis	parietal	SCAN

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:74186000-74188600	Enhancers	Brain Germinal Matrix	brain
2	chr15:74186200-74188600	Enhancers	Duodenum Mucosa	Duodenum
3	chr15:74186600-74188400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr15:74186800-74190000	Weak transcription	H1 Cell Line	embryonic stem cell
5	chr15:74187000-74188200	Enhancers	Cortex derived primary cultured neurospheres	brain
6	chr15:74187200-74188400	Enhancers	Fetal Brain Female	brain
7	chr15:74187200-74192600	Weak transcription	Spleen	Spleen
8	chr15:74187400-74188200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr15:74187600-74188200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
10	chr15:74187600-74188200	Enhancers	Fetal Brain Male	brain
11	chr15:74187800-74189800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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