Variant report

Variant	rs11639394
Chromosome Location	chr15:74130124-74130125
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs11632590	1.00[ASN][1000 genomes]
rs11633601	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11636381	0.84[EUR][1000 genomes]
rs11854314	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12900404	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12902040	0.82[ASN][1000 genomes]
rs12906932	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12914489	0.91[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs2123209	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs35192808	0.91[ASN][1000 genomes]
rs35697698	0.82[ASN][1000 genomes]
rs55841941	0.91[ASN][1000 genomes]
rs56047016	0.91[ASN][1000 genomes]
rs62004649	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs62004865	1.00[AMR][1000 genomes]
rs66610605	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs67962220	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1043335	chr15:74078689-74241186	Weak transcription Flanking Active TSS Strong transcription Enhancers Bivalent Enhancer Genic enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:74128800-74130600	Bivalent Enhancer	Skeletal Muscle Male	skeletal muscle
2	chr15:74128800-74132000	Enhancers	Skeletal Muscle Female	skeletal muscle
3	chr15:74129600-74130800	Weak transcription	Cortex derived primary cultured neurospheres	brain
4	chr15:74129600-74133200	Weak transcription	Spleen	Spleen
5	chr15:74130000-74130200	Enhancers	Fetal Brain Male	brain
6	chr15:74130000-74130200	Enhancers	Pancreas	Pancrea

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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