Variant report

Variant	rs11633601
Chromosome Location	chr15:74142116-74142117
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs11639394	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11854314	0.91[AMR][1000 genomes]
rs12900404	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12906932	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12914489	0.91[AMR][1000 genomes]
rs2123209	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62004649	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs62004865	1.00[AMR][1000 genomes]
rs66610605	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1043335	chr15:74078689-74241186	Weak transcription Flanking Active TSS Strong transcription Enhancers Bivalent Enhancer Genic enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:74132400-74146600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr15:74141600-74143000	Enhancers	Pancreas	Pancrea
3	chr15:74141800-74142200	Enhancers	Fetal Brain Male	brain
4	chr15:74141800-74142800	Enhancers	Fetal Brain Female	brain
5	chr15:74142000-74143000	Enhancers	Brain Germinal Matrix	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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