Variant report

Variant	rs12900404
Chromosome Location	chr15:74113007-74113008
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs11633601	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11636381	0.84[EUR][1000 genomes]
rs11639394	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11854314	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12906932	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12914489	0.91[AMR][1000 genomes]
rs2123209	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs62004649	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs62004865	1.00[AMR][1000 genomes]
rs66610605	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1043335	chr15:74078689-74241186	Weak transcription Flanking Active TSS Strong transcription Enhancers Bivalent Enhancer Genic enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:74111000-74114200	Weak transcription	Fetal Brain Male	brain
2	chr15:74111000-74119200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links