Variant report

Variant	rs4886470
Chromosome Location	chr15:74210428-74210429
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:1)
LncRNA
region (count:8)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:1 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:74209119..74211492-chr15:74491566..74493612,2	MCF-7	breast:

(count:8 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-STOML1-1	chr15:74209942-74211724	ENSG00000244984
2	lnc-LOXL1-1	chr15:74210409-74210628	ENSG00000251277
3	lnc-STOML1-1	chr15:74209937-74211724	ENSG00000244984
4	lnc-LOXL1-1	chr15:74209526-74211786	NONHSAT047177
5	lnc-STOML1-1	chr15:74209809-74211724	NONHSAT047178
6	lnc-STOML1-1	chr15:74209809-74211724	NONHSAT047179
7	lnc-STOML1-1	chr15:74209809-74211724	NONHSAT047180
8	lnc-STOML1-1	chr15:74209809-74211724	NONHSAT047182

No data

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs11855322	0.82[ASN][1000 genomes]
rs34432278	0.82[ASN][1000 genomes]
rs34641928	0.82[ASN][1000 genomes]
rs35196094	0.82[ASN][1000 genomes]
rs35737351	0.82[ASN][1000 genomes]
rs55736920	0.82[ASN][1000 genomes]
rs56116666	0.82[ASN][1000 genomes]
rs62004865	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1043335	chr15:74078689-74241186	Weak transcription Flanking Active TSS Strong transcription Enhancers Bivalent Enhancer Genic enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
2	nsv1603	chr15:74191222-74235733	Enhancers Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Active TSS Weak transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:56 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:74192600-74214000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
2	chr15:74198200-74215200	Weak transcription	Pancreas	Pancrea
3	chr15:74199200-74216200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
4	chr15:74199800-74211200	Weak transcription	NH-A	brain
5	chr15:74199800-74211400	Weak transcription	Osteobl	bone
6	chr15:74199800-74213800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr15:74200600-74212200	Weak transcription	Fetal Heart	heart
8	chr15:74201200-74211000	Weak transcription	Muscle Satellite Cultured Cells	--
9	chr15:74203600-74213800	Weak transcription	H1 Cell Line	embryonic stem cell
10	chr15:74204000-74214000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
11	chr15:74204400-74211400	Weak transcription	Fetal Stomach	stomach
12	chr15:74204400-74212000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
13	chr15:74204400-74212000	Weak transcription	Aorta	Aorta
14	chr15:74206800-74213400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
15	chr15:74207000-74211800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
16	chr15:74207000-74212000	Weak transcription	Placenta	Placenta
17	chr15:74207000-74213600	Weak transcription	Left Ventricle	heart
18	chr15:74207000-74214200	Weak transcription	H9 Cell Line	embryonic stem cell
19	chr15:74207400-74212000	Weak transcription	Primary T cells fromperipheralblood	blood
20	chr15:74207400-74212000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
21	chr15:74207600-74212000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
22	chr15:74207800-74213000	Weak transcription	Fetal Lung	lung
23	chr15:74208000-74214600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
24	chr15:74208200-74212200	Strong transcription	Primary T cells from cord blood	blood
25	chr15:74208800-74213600	Weak transcription	Colon Smooth Muscle	Colon
26	chr15:74208800-74215000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
27	chr15:74208800-74215400	Weak transcription	Esophagus	oesophagus
28	chr15:74208800-74215600	Weak transcription	Hela-S3	cervix
29	chr15:74209000-74210600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
30	chr15:74209000-74211000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
31	chr15:74209000-74211000	Weak transcription	HSMM	muscle
32	chr15:74209600-74215000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
33	chr15:74210000-74214400	Weak transcription	HSMMtube	muscle
34	chr15:74210200-74210600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
35	chr15:74210200-74211600	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
36	chr15:74210200-74211600	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
37	chr15:74210200-74211600	ZNF genes & repeats	Primary T helper naive cells fromperipheralblood	blood
38	chr15:74210200-74211600	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
39	chr15:74210200-74211600	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
40	chr15:74210200-74212200	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
41	chr15:74210200-74212400	Strong transcription	NHLF	lung
42	chr15:74210400-74210600	ZNF genes & repeats	H1 Derived Mesenchymal Stem Cells	ES cell derived
43	chr15:74210400-74210800	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
44	chr15:74210400-74210800	Strong transcription	NHDF-Ad	bronchial
45	chr15:74210400-74211000	Strong transcription	iPS-20b Cell Line	embryonic stem cell
46	chr15:74210400-74211200	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
47	chr15:74210400-74211200	Enhancers	Stomach Mucosa	stomach
48	chr15:74210400-74211400	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
49	chr15:74210400-74211600	ZNF genes & repeats	Primary hematopoietic stem cells	blood
50	chr15:74210400-74211600	Strong transcription	Primary T helper naive cells from peripheral blood	blood

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