Variant report

Variant	rs4889110
Chromosome Location	chr16:80182097-80182098
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10514485	0.89[ASN][1000 genomes]
rs10514486	0.91[ASN][1000 genomes]
rs11150246	0.82[ASN][1000 genomes]
rs11866315	0.99[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12444051	0.83[ASN][1000 genomes]
rs12923045	0.90[ASN][1000 genomes]
rs16952510	0.91[ASN][1000 genomes]
rs1842021	0.89[ASN][1000 genomes]
rs1963251	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1975949	0.94[EUR][1000 genomes]
rs2016205	0.84[ASN][1000 genomes]
rs2061791	0.91[ASN][1000 genomes]
rs2219777	0.91[ASN][1000 genomes]
rs6564741	0.94[EUR][1000 genomes]
rs7184478	0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833298	chr16:80122337-80314603	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv1055982	chr16:80151604-80202923	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:80181000-80185200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr16:80181200-80184600	Weak transcription	NH-A	brain
3	chr16:80181400-80182200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr16:80181400-80184400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr16:80181600-80182400	Enhancers	HSMM	muscle
6	chr16:80181600-80182400	Enhancers	HSMMtube	muscle
7	chr16:80181800-80184400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr16:80182000-80182400	Weak transcription	Fetal Muscle Leg	muscle
9	chr16:80182000-80184200	Weak transcription	Muscle Satellite Cultured Cells	--
10	chr16:80182000-80184200	Weak transcription	NHDF-Ad	bronchial
11	chr16:80182000-80184400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links