Variant report
| Variant | rs12923045 |
|---|---|
| Chromosome Location | chr16:80165797-80165798 |
| allele | A/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr16:80164328..80166827-chr16:80167258..80169658,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:16)
| rs_ID | r2[population] |
|---|---|
| rs10514485 | 0.87[AMR][1000 genomes];0.97[ASN][1000 genomes] |
| rs10514486 | 0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs11150246 | 0.84[AMR][1000 genomes];0.90[ASN][1000 genomes] |
| rs12444051 | 0.91[ASN][1000 genomes] |
| rs12596092 | 0.81[AMR][1000 genomes] |
| rs16952470 | 0.86[AMR][1000 genomes] |
| rs16952510 | 0.86[AMR][1000 genomes];0.99[ASN][1000 genomes] |
| rs1842021 | 0.96[ASN][1000 genomes] |
| rs1963251 | 0.89[ASN][1000 genomes] |
| rs2016205 | 0.91[ASN][1000 genomes] |
| rs2061791 | 0.87[AMR][1000 genomes];0.99[ASN][1000 genomes] |
| rs2219777 | 0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs4889110 | 0.90[ASN][1000 genomes] |
| rs6564741 | 0.81[ASN][1000 genomes] |
| rs7184478 | 0.89[AFR][1000 genomes];0.87[AMR][1000 genomes];0.95[ASN][1000 genomes] |
| rs7202741 | 0.87[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv906995 | chr16:80094975-80166677 | Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer | TF binding regionChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| 2 | nsv833298 | chr16:80122337-80314603 | Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| 3 | nsv1055982 | chr16:80151604-80202923 | Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS | Chromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr16:80164800-80165800 | Weak transcription | hESC Derived CD184+ Endoderm Cultured Cells | ES cell derived |
