Variant report

Variant	rs1842021
Chromosome Location	chr16:80162607-80162608
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10514483	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10514485	0.99[ASN][1000 genomes]
rs10514486	0.96[ASN][1000 genomes]
rs1110761	0.98[EUR][1000 genomes]
rs11150246	0.91[ASN][1000 genomes]
rs12444051	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12923045	0.96[ASN][1000 genomes]
rs16952510	0.96[ASN][1000 genomes]
rs1963251	0.87[ASN][1000 genomes]
rs2009458	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2016178	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2016205	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2061791	0.96[ASN][1000 genomes]
rs2219777	0.95[ASN][1000 genomes]
rs4145109	0.81[AFR][1000 genomes]
rs4889105	0.93[AFR][1000 genomes];0.86[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs4889110	0.89[ASN][1000 genomes]
rs7184478	0.98[ASN][1000 genomes]
rs7202741	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv906995	chr16:80094975-80166677	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv833298	chr16:80122337-80314603	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv1055982	chr16:80151604-80202923	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs1842021	NUDT7	cis	parietal	SCAN
rs1842021	CHST6	cis	cerebellum	SCAN

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:80162200-80164800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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