Variant report

Variant	rs4889443
Chromosome Location	chr16:81974671-81974672
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:13)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:13 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr16:81974148..81975083-chr16:82064743..82066000,4	MCF-7	breast:
2	chr16:81972632..81975511-chr16:82029375..82034440,5	MCF-7	breast:
3	chr16:81974282..81974975-chr16:82264426..82265394,2	MCF-7	breast:
4	chr16:81974107..81974987-chr16:82028201..82029279,3	MCF-7	breast:
5	chr16:81974221..81975055-chr16:82095227..82096139,4	MCF-7	breast:
6	chr16:81974143..81975083-chr16:82263601..82264236,3	K562	blood:
7	chr16:81974180..81974994-chr16:82263377..82264081,3	MCF-7	breast:
8	chr16:81924074..81924646-chr16:81974313..81975045,3	MCF-7	breast:
9	chr16:81974156..81975014-chr16:82095141..82095762,2	K562	blood:
10	chr16:81973991..81975248-chr16:82030401..82031511,13	MCF-7	breast:
11	chr16:81974029..81975094-chr16:82030141..82031465,7	MCF-7	breast:
12	chr16:81973095..81975241-chr16:81976233..81977759,2	K562	blood:
13	chr16:81974410..81975126-chr16:82095007..82095937,2	MCF-7	breast:

No data

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10514519	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12923387	0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4078270	0.87[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4243225	1.00[CHB][hapmap]
rs4258608	1.00[CHB][hapmap];0.89[JPT][hapmap];0.90[ASN][1000 genomes]
rs4603554	1.00[CHB][hapmap]
rs4611451	1.00[CHB][hapmap]
rs4888191	0.87[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4888195	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4888196	0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4888198	0.93[CEU][hapmap];1.00[CHB][hapmap];0.89[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4889449	0.91[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs7201504	1.00[CHB][hapmap]
rs7205376	1.00[CHB][hapmap];0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs8047356	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv573365	chr16:81804972-81975892	Strong transcription Bivalent/Poised TSS Weak transcription ZNF genes & repeats Genic enhancers Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:71 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:81920400-81982000	Strong transcription	Monocytes-CD14+_RO01746	blood
2	chr16:81925800-81992600	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr16:81933000-81983600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr16:81936000-81982000	Weak transcription	Gastric	stomach
5	chr16:81936000-81984600	Strong transcription	Primary monocytes fromperipheralblood	blood
6	chr16:81945000-81984600	Weak transcription	Rectal Mucosa Donor 31	rectum
7	chr16:81946200-81985200	Weak transcription	Rectal Smooth Muscle	rectum
8	chr16:81950600-81982000	Strong transcription	GM12878-XiMat	blood
9	chr16:81952000-81982800	Strong transcription	Primary B cells from peripheral blood	blood
10	chr16:81952400-81983000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
11	chr16:81952600-81981800	Strong transcription	Primary B cells from cord blood	blood
12	chr16:81952800-81984600	Strong transcription	Liver	Liver
13	chr16:81953000-81977400	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
14	chr16:81954800-81991800	Weak transcription	Fetal Thymus	thymus
15	chr16:81959600-81983800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
16	chr16:81960600-81982400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
17	chr16:81961600-81984600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
18	chr16:81962600-81995800	Weak transcription	Small Intestine	intestine
19	chr16:81962800-81983600	Weak transcription	Primary T cells fromperipheralblood	blood
20	chr16:81963000-81982000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
21	chr16:81963000-81984600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
22	chr16:81963600-81979600	Weak transcription	Colonic Mucosa	Colon
23	chr16:81963600-81983200	Strong transcription	Primary neutrophils fromperipheralblood	blood
24	chr16:81967400-81984600	Weak transcription	Placenta	Placenta
25	chr16:81968200-81984200	Strong transcription	Primary hematopoietic stem cells	blood
26	chr16:81970200-81990800	Weak transcription	Pancreas	Pancrea
27	chr16:81970800-81979800	Weak transcription	Duodenum Smooth Muscle	Duodenum
28	chr16:81970800-81991200	Weak transcription	Thymus	Thymus
29	chr16:81970800-81994600	Weak transcription	Fetal Intestine Large	intestine
30	chr16:81971200-81976400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
31	chr16:81971200-81976600	Enhancers	HUES6 Cell Line	embryonic stem cell
32	chr16:81971200-81976800	Weak transcription	Colon Smooth Muscle	Colon
33	chr16:81971200-81977400	Enhancers	iPS-15b Cell Line	embryonic stem cell
34	chr16:81971600-81984600	Weak transcription	Left Ventricle	heart
35	chr16:81971800-81976800	Strong transcription	Spleen	Spleen
36	chr16:81972200-81993200	Weak transcription	Fetal Kidney	kidney
37	chr16:81972400-81977600	Enhancers	iPS-18 Cell Line	embryonic stem cell
38	chr16:81973000-81974800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
39	chr16:81973000-81976000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
40	chr16:81973000-81976000	Weak transcription	Adipose Nuclei	Adipose
41	chr16:81973200-81976600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
42	chr16:81973200-81984600	Weak transcription	Fetal Intestine Small	intestine
43	chr16:81973400-81975800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
44	chr16:81973400-81977200	Enhancers	HUES48 Cell Line	embryonic stem cell
45	chr16:81973400-81979600	Weak transcription	Lung	lung
46	chr16:81973600-81975800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
47	chr16:81973600-81980800	Weak transcription	Fetal Stomach	stomach
48	chr16:81973800-81974800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
49	chr16:81973800-81974800	Weak transcription	H1 Cell Line	embryonic stem cell
50	chr16:81973800-81974800	Weak transcription	iPS-20b Cell Line	embryonic stem cell

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