Variant report

Variant	rs4889449
Chromosome Location	chr16:81998003-81998004
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10514519	0.80[CEU][hapmap]
rs12923387	0.81[EUR][1000 genomes]
rs4078270	0.80[CEU][hapmap]
rs4243225	0.85[ASN][1000 genomes]
rs4603554	0.85[ASN][1000 genomes]
rs4888191	0.80[CEU][hapmap];0.80[EUR][1000 genomes]
rs4888195	0.86[CEU][hapmap]
rs4888196	0.81[EUR][1000 genomes]
rs4888198	1.00[CEU][hapmap];0.86[JPT][hapmap];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4888201	0.89[ASN][1000 genomes]
rs4889443	0.86[CEU][hapmap];0.91[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs7198946	0.97[ASN][1000 genomes]
rs7201504	0.86[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs7205376	0.86[CEU][hapmap];0.89[AMR][1000 genomes];0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs8047356	0.81[AMR][1000 genomes];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv907012	chr16:81986896-82115148	ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:81982600-82007000	Weak transcription	Gastric	stomach
2	chr16:81993400-81999600	Weak transcription	Liver	Liver
3	chr16:81994800-82000800	Weak transcription	Primary B cells from peripheral blood	blood
4	chr16:81996400-81998400	Weak transcription	Primary neutrophils fromperipheralblood	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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