Variant report

Variant	rs8047356
Chromosome Location	chr16:81983099-81983100
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10514519	1.00[CHB][hapmap];1.00[CHD][hapmap];0.83[GIH][hapmap];0.92[TSI][hapmap];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12716928	0.85[CHD][hapmap]
rs4078270	0.82[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.83[GIH][hapmap];0.86[LWK][hapmap];0.88[MEX][hapmap];0.82[MKK][hapmap];0.92[TSI][hapmap];0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4243225	1.00[CHB][hapmap];0.87[CHD][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs4258608	1.00[CHB][hapmap]
rs4284633	0.85[CHD][hapmap]
rs4603554	1.00[CHB][hapmap];0.87[CHD][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];1.00[ASN][1000 genomes]
rs4611451	1.00[CHB][hapmap]
rs4888191	0.82[CHB][hapmap]
rs4888195	1.00[CHB][hapmap]
rs4888198	1.00[CHB][hapmap];1.00[CHD][hapmap];0.86[MKK][hapmap];0.83[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs4889443	1.00[CHB][hapmap]
rs4889449	0.81[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs7198946	0.82[ASN][1000 genomes]
rs7201504	1.00[CHB][hapmap];0.85[ASN][1000 genomes]
rs7205376	0.82[CEU][hapmap];1.00[CHB][hapmap];0.87[CHD][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1059532	chr16:81981559-81995177	Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:41 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:81925800-81992600	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr16:81933000-81983600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr16:81936000-81984600	Strong transcription	Primary monocytes fromperipheralblood	blood
4	chr16:81945000-81984600	Weak transcription	Rectal Mucosa Donor 31	rectum
5	chr16:81946200-81985200	Weak transcription	Rectal Smooth Muscle	rectum
6	chr16:81952800-81984600	Strong transcription	Liver	Liver
7	chr16:81954800-81991800	Weak transcription	Fetal Thymus	thymus
8	chr16:81959600-81983800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
9	chr16:81961600-81984600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr16:81962600-81995800	Weak transcription	Small Intestine	intestine
11	chr16:81962800-81983600	Weak transcription	Primary T cells fromperipheralblood	blood
12	chr16:81963000-81984600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
13	chr16:81963600-81983200	Strong transcription	Primary neutrophils fromperipheralblood	blood
14	chr16:81967400-81984600	Weak transcription	Placenta	Placenta
15	chr16:81968200-81984200	Strong transcription	Primary hematopoietic stem cells	blood
16	chr16:81970200-81990800	Weak transcription	Pancreas	Pancrea
17	chr16:81970800-81991200	Weak transcription	Thymus	Thymus
18	chr16:81970800-81994600	Weak transcription	Fetal Intestine Large	intestine
19	chr16:81971600-81984600	Weak transcription	Left Ventricle	heart
20	chr16:81972200-81993200	Weak transcription	Fetal Kidney	kidney
21	chr16:81973200-81984600	Weak transcription	Fetal Intestine Small	intestine
22	chr16:81975600-81983200	Strong transcription	Duodenum Mucosa	Duodenum
23	chr16:81975600-81984800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
24	chr16:81976800-81984600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr16:81981800-81985400	ZNF genes & repeats	Primary B cells from cord blood	blood
26	chr16:81982000-81985000	ZNF genes & repeats	GM12878-XiMat	blood
27	chr16:81982000-81985600	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
28	chr16:81982000-81986800	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
29	chr16:81982400-81987000	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
30	chr16:81982600-81984400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
31	chr16:81982600-81984600	Weak transcription	Spleen	Spleen
32	chr16:81982600-81990200	Weak transcription	Lung	lung
33	chr16:81982600-81991200	Weak transcription	Rectal Mucosa Donor 29	rectum
34	chr16:81982600-81996600	Weak transcription	Fetal Stomach	stomach
35	chr16:81982600-82007000	Weak transcription	Gastric	stomach
36	chr16:81982800-81983200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
37	chr16:81982800-81984600	Weak transcription	Duodenum Smooth Muscle	Duodenum
38	chr16:81982800-81985400	ZNF genes & repeats	Primary B cells from peripheral blood	blood
39	chr16:81983000-81984600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
40	chr16:81983000-81984600	Weak transcription	Adipose Nuclei	Adipose
41	chr16:81983000-81985400	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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