Variant report

Variant	rs489516
Chromosome Location	chr6:11604537-11604538
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:11598388..11600876-chr6:11602880..11604674,2	MCF-7	breast:
2	chr6:11603395..11605168-chr6:11610638..11612350,2	K562	blood:

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs515246	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs520927	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs528679	0.91[ASN][1000 genomes]
rs604711	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs605058	0.91[ASN][1000 genomes]

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:11593200-11605400	Weak transcription	Right Atrium	heart
2	chr6:11593600-11604600	Weak transcription	Muscle Satellite Cultured Cells	--
3	chr6:11593800-11609800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr6:11597400-11606600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr6:11599800-11606600	Weak transcription	Fetal Intestine Large	intestine
6	chr6:11600000-11605400	Weak transcription	Placenta	Placenta
7	chr6:11600000-11605400	Weak transcription	Placenta Amnion	Placenta Amnion
8	chr6:11600800-11606400	Weak transcription	Aorta	Aorta
9	chr6:11601000-11605400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr6:11601200-11605400	Weak transcription	Fetal Muscle Leg	muscle
11	chr6:11601600-11605600	Weak transcription	Ovary	ovary
12	chr6:11602400-11604800	Strong transcription	HSMM	muscle
13	chr6:11602400-11605000	Strong transcription	HSMMtube	muscle
14	chr6:11602800-11605400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
15	chr6:11602800-11605600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
16	chr6:11602800-11609200	Weak transcription	HUES6 Cell Line	embryonic stem cell
17	chr6:11602800-11609800	Weak transcription	H9 Cell Line	embryonic stem cell
18	chr6:11603000-11605200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr6:11603000-11605400	Weak transcription	HUES64 Cell Line	embryonic stem cell
20	chr6:11603000-11606600	Weak transcription	Esophagus	oesophagus
21	chr6:11603000-11606600	Weak transcription	Spleen	Spleen
22	chr6:11603000-11609200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
23	chr6:11603000-11609400	Weak transcription	HUES48 Cell Line	embryonic stem cell
24	chr6:11603200-11604600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
25	chr6:11603200-11605400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
26	chr6:11603200-11605600	Weak transcription	Fetal Intestine Small	intestine
27	chr6:11603400-11606400	Weak transcription	A549	lung
28	chr6:11603400-11607400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
29	chr6:11603800-11605600	Enhancers	HUVEC	blood vessel
30	chr6:11603800-11609200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
31	chr6:11604400-11606000	Enhancers	Monocytes-CD14+_RO01746	blood
32	chr6:11604400-11606200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
33	chr6:11604400-11606200	Enhancers	Primary monocytes fromperipheralblood	blood
34	chr6:11604400-11606200	Enhancers	Primary neutrophils fromperipheralblood	blood

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