Variant report

Variant	rs604711
Chromosome Location	chr6:11598281-11598282
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs489516	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs515246	0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs520927	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs528679	0.94[ASN][1000 genomes]
rs605058	0.94[ASN][1000 genomes]

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs604711	TMEM14B	cis	parietal	SCAN
rs604711	TMEM14C	cis	parietal	SCAN
rs604711	MUTED	cis	cerebellum	SCAN

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:11593000-11598600	Weak transcription	A549	lung
2	chr6:11593200-11600800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr6:11593200-11605400	Weak transcription	Right Atrium	heart
4	chr6:11593600-11604600	Weak transcription	Muscle Satellite Cultured Cells	--
5	chr6:11593800-11609800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr6:11595200-11598600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr6:11595200-11602400	Weak transcription	HSMMtube	muscle
8	chr6:11597400-11598800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
9	chr6:11597400-11599200	Weak transcription	Placenta Amnion	Placenta Amnion
10	chr6:11597400-11606600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr6:11597600-11598800	Weak transcription	HSMM	muscle
12	chr6:11597600-11599600	Enhancers	Ovary	ovary
13	chr6:11597600-11599800	Enhancers	Fetal Intestine Large	intestine
14	chr6:11598000-11599800	Enhancers	HepG2	liver
15	chr6:11598000-11600000	Enhancers	Primary neutrophils fromperipheralblood	blood
16	chr6:11598000-11600000	Enhancers	Placenta	Placenta

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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