Variant report

Variant	rs520927
Chromosome Location	chr6:11602365-11602366
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:11599973..11602605-chr6:11612731..11615608,2	MCF-7	breast:

Extended variants
information (count: 5 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs489516	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs515246	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs528679	0.94[ASN][1000 genomes]
rs604711	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs605058	0.94[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs520927	MUTED	cis	cerebellum	SCAN

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:11593200-11605400	Weak transcription	Right Atrium	heart
2	chr6:11593600-11604600	Weak transcription	Muscle Satellite Cultured Cells	--
3	chr6:11593800-11609800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr6:11595200-11602400	Weak transcription	HSMMtube	muscle
5	chr6:11597400-11606600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr6:11599000-11602600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr6:11599200-11603400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr6:11599600-11602400	Weak transcription	HSMM	muscle
9	chr6:11599800-11603000	Weak transcription	Fetal Intestine Small	intestine
10	chr6:11599800-11604400	Weak transcription	Primary monocytes fromperipheralblood	blood
11	chr6:11599800-11604400	Weak transcription	Monocytes-CD14+_RO01746	blood
12	chr6:11599800-11606600	Weak transcription	Fetal Intestine Large	intestine
13	chr6:11600000-11604400	Weak transcription	Primary neutrophils fromperipheralblood	blood
14	chr6:11600000-11605400	Weak transcription	Placenta	Placenta
15	chr6:11600000-11605400	Weak transcription	Placenta Amnion	Placenta Amnion
16	chr6:11600800-11606400	Weak transcription	Aorta	Aorta
17	chr6:11601000-11605400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
18	chr6:11601200-11605400	Weak transcription	Fetal Muscle Leg	muscle
19	chr6:11601400-11603200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
20	chr6:11601600-11605600	Weak transcription	Ovary	ovary
21	chr6:11602000-11602600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
22	chr6:11602000-11602600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
23	chr6:11602000-11602800	Enhancers	ES-I3 Cell Line	embryonic stem cell
24	chr6:11602000-11602800	Enhancers	iPS-15b Cell Line	embryonic stem cell
25	chr6:11602000-11602800	Enhancers	iPS-18 Cell Line	embryonic stem cell
26	chr6:11602000-11603000	Enhancers	HUES48 Cell Line	embryonic stem cell
27	chr6:11602000-11603000	Enhancers	iPS-20b Cell Line	embryonic stem cell
28	chr6:11602200-11602400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
29	chr6:11602200-11602800	Enhancers	H9 Cell Line	embryonic stem cell
30	chr6:11602200-11602800	Enhancers	HUES6 Cell Line	embryonic stem cell
31	chr6:11602200-11602800	Enhancers	HUVEC	blood vessel
32	chr6:11602200-11603000	Enhancers	ES-WA7 Cell Line	embryonic stem cell
33	chr6:11602200-11603000	Enhancers	HUES64 Cell Line	embryonic stem cell
34	chr6:11602200-11603200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
35	chr6:11602200-11603400	Enhancers	A549	lung

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