Variant report

Variant	rs4895570
Chromosome Location	chr6:139908614-139908615
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:14)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:14 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:139907868..139910636-chr6:139948346..139950350,2	K562	blood:
2	chr17:62501774..62502414-chr6:139908405..139909252,2	Hela-S3	cervix:
3	chr6:139689865..139691753-chr6:139907672..139909566,2	MCF-7	breast:
4	chr6:139695373..139699220-chr6:139907427..139911701,8	MCF-7	breast:
5	chr6:139691228..139695923-chr6:139905258..139909765,7	K562	blood:
6	chr6:139691841..139699576-chr6:139900868..139917289,34	MCF-7	breast:
7	chr6:139907871..139910269-chr6:139911458..139913743,2	K562	blood:
8	chr6:139908098..139910179-chr6:139917133..139919110,3	K562	blood:
9	chr6:139691228..139697226-chr6:139904818..139909765,9	K562	blood:
10	chr6:139908098..139910179-chr6:139916224..139919110,3	K562	blood:
11	chr6:139902793..139905980-chr6:139905991..139910426,4	MCF-7	breast:
12	chr6:139851044..139853984-chr6:139908364..139910763,2	MCF-7	breast:
13	chr6:139907382..139909260-chr6:139922632..139925256,2	K562	blood:
14	chr6:139908271..139911254-chr6:139912012..139913665,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000108654	Chromatin interaction
ENSG00000164442	Chromatin interaction

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10872521	0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1936207	0.82[ASN][1000 genomes]
rs4895571	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4896481	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4896482	0.84[EUR][1000 genomes]
rs6570366	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6914856	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs727098	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7357040	0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7739791	0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7763654	0.96[ASN][1000 genomes]
rs9321730	0.88[ASN][1000 genomes]
rs9484296	0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9495535	0.81[AMR][1000 genomes]
rs9495546	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869066	chr6:139777114-140639695	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	26 gene(s)	inside rSNPs	diseases
2	nsv970368	chr6:139903788-139911187	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	4 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:47 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:139899600-139908800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr6:139900000-139908800	Weak transcription	Fetal Lung	lung
3	chr6:139900200-139909000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr6:139900400-139908800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr6:139900400-139908800	Weak transcription	Fetal Intestine Large	intestine
6	chr6:139900800-139908800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
7	chr6:139900800-139919200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr6:139902400-139909200	Weak transcription	Right Ventricle	heart
9	chr6:139904800-139908800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr6:139904800-139908800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr6:139904800-139908800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr6:139905000-139908800	Weak transcription	Osteobl	bone
13	chr6:139906200-139909200	Weak transcription	Placenta	Placenta
14	chr6:139906800-139913400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
15	chr6:139906800-139913800	Enhancers	Fetal Kidney	kidney
16	chr6:139907200-139909000	Enhancers	A549	lung
17	chr6:139907200-139919800	Enhancers	Rectal Mucosa Donor 31	rectum
18	chr6:139907400-139909400	Enhancers	HepG2	liver
19	chr6:139907400-139910200	Enhancers	Stomach Mucosa	stomach
20	chr6:139907600-139908800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
21	chr6:139907600-139909000	Enhancers	Muscle Satellite Cultured Cells	--
22	chr6:139907600-139909200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
23	chr6:139907600-139909200	Weak transcription	Left Ventricle	heart
24	chr6:139907600-139910600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
25	chr6:139907600-139913800	Weak transcription	Pancreas	Pancrea
26	chr6:139907600-139918400	Weak transcription	Fetal Brain Male	brain
27	chr6:139907600-139925200	Weak transcription	Aorta	Aorta
28	chr6:139907800-139908800	Weak transcription	Sigmoid Colon	Sigmoid Colon
29	chr6:139907800-139908800	Weak transcription	Skeletal Muscle Male	skeletal muscle
30	chr6:139907800-139909000	Weak transcription	Placenta Amnion	Placenta Amnion
31	chr6:139907800-139909200	Weak transcription	Ovary	ovary
32	chr6:139908000-139910200	Enhancers	HUVEC	blood vessel
33	chr6:139908200-139909200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
34	chr6:139908200-139910000	Enhancers	K562	blood
35	chr6:139908400-139908800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
36	chr6:139908400-139908800	Weak transcription	Duodenum Mucosa	Duodenum
37	chr6:139908400-139908800	Weak transcription	HSMM	muscle
38	chr6:139908400-139908800	Weak transcription	NHDF-Ad	bronchial
39	chr6:139908400-139908800	Weak transcription	NHLF	lung
40	chr6:139908600-139909600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
41	chr6:139908600-139909600	Enhancers	Small Intestine	intestine
42	chr6:139908600-139909800	Flanking Active TSS	Hela-S3	cervix
43	chr6:139908600-139909800	Enhancers	NHEK	skin
44	chr6:139908600-139910200	Enhancers	Fetal Heart	heart
45	chr6:139908600-139910200	Enhancers	HMEC	breast
46	chr6:139908600-139910400	Enhancers	NH-A	brain
47	chr6:139908600-139910600	Enhancers	Pancreatic Islets	Pancreatic Islet

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