Variant report

Variant	rs7357040
Chromosome Location	chr6:139925746-139925747
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:139924274..139926752-chr6:139931019..139932700,2	K562	blood:

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs10223884	0.82[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs10872521	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12202000	0.82[AMR][1000 genomes]
rs12203872	0.81[AMR][1000 genomes]
rs12211407	0.82[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs1541249	0.90[CEU][hapmap];0.83[YRI][hapmap];0.82[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs1936207	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2327975	0.82[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs2327976	0.82[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs2876419	0.82[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs4317424	0.80[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs4419683	0.82[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs4419684	0.82[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs4895570	0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4895571	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4896478	0.86[CEU][hapmap];0.82[AMR][1000 genomes]
rs4896479	0.86[CEU][hapmap];0.82[AMR][1000 genomes]
rs4896480	0.86[CEU][hapmap];0.82[AMR][1000 genomes]
rs4896481	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4896482	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4896483	0.84[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs4896484	0.86[CEU][hapmap];0.84[YRI][hapmap]
rs6570366	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6914856	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs727098	0.83[CEU][hapmap];0.95[JPT][hapmap];0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7739791	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7763275	0.84[CEU][hapmap];0.95[JPT][hapmap]
rs7763654	0.81[ASN][1000 genomes]
rs9285491	0.85[CEU][hapmap];0.83[YRI][hapmap];0.80[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs9321730	0.85[JPT][hapmap]
rs9321734	0.86[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs9321735	0.85[CEU][hapmap];0.81[AMR][1000 genomes]
rs9321737	0.82[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs9376438	0.82[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs9389700	0.80[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs9403095	0.85[CEU][hapmap];0.82[AMR][1000 genomes]
rs9484293	0.83[AMR][1000 genomes]
rs9484294	0.91[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs9484296	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9484298	0.82[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs9495535	0.85[CEU][hapmap]
rs9495541	0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9495545	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9495546	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9495552	0.80[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869066	chr6:139777114-140639695	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	26 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:139913000-139928600	Weak transcription	Ovary	ovary
2	chr6:139919800-139927600	Weak transcription	Fetal Kidney	kidney
3	chr6:139919800-139928200	Weak transcription	Fetal Lung	lung
4	chr6:139920800-139928600	Weak transcription	Osteobl	bone
5	chr6:139924400-139926600	Weak transcription	Placenta	Placenta
6	chr6:139924400-139928400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr6:139924600-139928600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
8	chr6:139925000-139928600	Weak transcription	K562	blood
9	chr6:139925200-139928000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
10	chr6:139925400-139928000	Weak transcription	HUES6 Cell Line	embryonic stem cell
11	chr6:139925400-139928400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr6:139925400-139928400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
13	chr6:139925400-139928400	Weak transcription	Fetal Stomach	stomach
14	chr6:139925400-139928600	Weak transcription	Fetal Brain Male	brain
15	chr6:139925400-139928800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr6:139925400-139928800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
17	chr6:139925400-139928800	Weak transcription	Aorta	Aorta

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