Variant report

Variant	rs4896483
Chromosome Location	chr6:139946964-139946965
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:139944678..139946977-chr6:140467437..140468966,2	K562	blood:
2	chr6:139694364..139697265-chr6:139946900..139948986,2	K562	blood:
3	chr6:139693949..139699229-chr6:139943197..139952021,15	K562	blood:
4	chr6:139933085..139934923-chr6:139946118..139948302,2	K562	blood:
5	chr6:139946371..139948885-chr6:139954792..139957016,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000164442	Chromatin interaction

Extended variants
information (count: 54 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:53)

rs_ID	r²[population]
rs10223884	0.98[AFR][1000 genomes];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12202000	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12203872	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12205687	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12211407	0.98[AFR][1000 genomes];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1541249	0.98[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1936211	0.84[AFR][1000 genomes]
rs2327975	0.98[AFR][1000 genomes];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2327976	0.98[AFR][1000 genomes];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2876419	0.98[AFR][1000 genomes];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4317424	0.96[AFR][1000 genomes];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4419683	0.98[AFR][1000 genomes];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4419684	0.98[AFR][1000 genomes];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4557537	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4895574	0.87[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs4896478	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4896479	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4896480	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4896482	0.85[AMR][1000 genomes]
rs6570368	0.86[AFR][1000 genomes]
rs6917245	0.86[AFR][1000 genomes]
rs6917394	0.87[AFR][1000 genomes]
rs6917655	0.86[AFR][1000 genomes]
rs6940157	0.87[AFR][1000 genomes]
rs7357040	0.84[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs7383441	0.89[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs7738637	0.82[EUR][1000 genomes]
rs7738952	0.87[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs7759402	0.86[AFR][1000 genomes]
rs9285491	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9321734	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9321735	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9321737	0.98[AFR][1000 genomes];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9321738	0.87[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs9321739	0.84[EUR][1000 genomes]
rs9321740	0.86[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs9321741	0.87[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs9373239	0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9373240	0.89[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs9376438	0.98[AFR][1000 genomes];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9376441	0.89[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs9385870	0.89[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs9389698	0.82[AFR][1000 genomes];0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9389700	0.96[AFR][1000 genomes];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9389702	0.89[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs9399287	0.87[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs9403095	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9484293	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9484294	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9484295	0.95[ASN][1000 genomes]
rs9484298	0.98[AFR][1000 genomes];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9495535	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9495552	0.94[AFR][1000 genomes];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869066	chr6:139777114-140639695	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	26 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:139944800-139949600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
2	chr6:139945400-139947400	Enhancers	Primary monocytes fromperipheralblood	blood
3	chr6:139946000-139948200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
4	chr6:139946200-139947000	Flanking Active TSS	K562	blood
5	chr6:139946200-139947400	Enhancers	Primary hematopoietic stem cells	blood
6	chr6:139946200-139948800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr6:139946200-139949200	Enhancers	iPS-18 Cell Line	embryonic stem cell
8	chr6:139946200-139949600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr6:139946400-139947600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr6:139946400-139947800	Enhancers	Spleen	Spleen
11	chr6:139946400-139948600	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
12	chr6:139946600-139947600	Weak transcription	HepG2	liver
13	chr6:139946600-139948800	Enhancers	Fetal Kidney	kidney
14	chr6:139946600-139955400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
15	chr6:139946800-139947000	Bivalent Enhancer	H1 Cell Line	embryonic stem cell
16	chr6:139946800-139947000	Enhancers	iPS-15b Cell Line	embryonic stem cell
17	chr6:139946800-139947000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
18	chr6:139946800-139947400	Weak transcription	HUES64 Cell Line	embryonic stem cell
19	chr6:139946800-139947400	Bivalent Enhancer	iPS-20b Cell Line	embryonic stem cell
20	chr6:139946800-139947600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
21	chr6:139946800-139947600	Enhancers	Adipose Nuclei	Adipose
22	chr6:139946800-139948000	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
23	chr6:139946800-139948200	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
24	chr6:139946800-139949000	Enhancers	HUES6 Cell Line	embryonic stem cell
25	chr6:139946800-139949600	Enhancers	HUES48 Cell Line	embryonic stem cell
26	chr6:139946800-139950000	Enhancers	Cortex derived primary cultured neurospheres	brain

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