Variant report

Variant	rs7383441
Chromosome Location	chr6:139956092-139956093
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:139946371..139948885-chr6:139954792..139957016,2	MCF-7	breast:
2	chr6:139951608..139953650-chr6:139955302..139957667,2	K562	blood:

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs10223884	0.91[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs12202000	0.81[EUR][1000 genomes]
rs12211407	0.91[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs1541249	0.91[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs1936211	0.92[AFR][1000 genomes]
rs2327975	0.91[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs2327976	0.91[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs2876419	0.91[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs4317424	0.90[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs4419683	0.91[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs4419684	0.91[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs4895574	0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4896483	0.89[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs6570368	0.94[AFR][1000 genomes]
rs6917245	0.94[AFR][1000 genomes]
rs6917394	0.94[AFR][1000 genomes]
rs6917655	0.94[AFR][1000 genomes]
rs6940157	0.94[AFR][1000 genomes]
rs7738637	0.88[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7738952	0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7759402	0.94[AFR][1000 genomes]
rs9285491	0.87[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs9321734	0.88[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs9321735	0.82[EUR][1000 genomes]
rs9321737	0.91[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs9321738	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9321739	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9321740	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9321741	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9373239	0.81[EUR][1000 genomes]
rs9373240	0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9376438	0.91[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs9376441	0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9385870	0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9389700	0.90[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs9389702	0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9399287	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9403095	0.82[EUR][1000 genomes]
rs9484294	0.81[AFR][1000 genomes]
rs9484298	0.91[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs9495552	0.87[AFR][1000 genomes];0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869066	chr6:139777114-140639695	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	26 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:139949800-139959400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
2	chr6:139955200-139958400	Weak transcription	K562	blood
3	chr6:139955400-139958000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr6:139956000-139957800	Enhancers	HMEC	breast

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links