Variant report

Variant	rs6917655
Chromosome Location	chr6:139960170-139960171
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:139869684..139871856-chr6:139959904..139962186,2	K562	blood:

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs10223884	0.88[AFR][1000 genomes]
rs12191119	0.82[CEU][hapmap];0.82[TSI][hapmap];0.81[EUR][1000 genomes]
rs12211407	0.88[AFR][1000 genomes]
rs1541248	0.81[CEU][hapmap];0.85[EUR][1000 genomes]
rs1541249	0.87[YRI][hapmap];0.88[AFR][1000 genomes]
rs1936211	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2327975	0.88[AFR][1000 genomes]
rs2327976	0.88[AFR][1000 genomes]
rs2876419	0.88[AFR][1000 genomes]
rs4317424	0.87[AFR][1000 genomes]
rs4419683	0.88[AFR][1000 genomes]
rs4419684	0.88[AFR][1000 genomes]
rs4895572	0.82[CEU][hapmap];0.81[EUR][1000 genomes]
rs4895573	0.81[EUR][1000 genomes]
rs4895574	0.94[ASW][hapmap];1.00[LWK][hapmap];0.96[MKK][hapmap];0.90[YRI][hapmap];0.98[AFR][1000 genomes]
rs4896483	0.86[AFR][1000 genomes]
rs4896484	0.87[YRI][hapmap]
rs6570368	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6917245	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6917394	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6940157	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7349945	0.81[EUR][1000 genomes]
rs7383441	0.94[AFR][1000 genomes]
rs7738637	0.82[AFR][1000 genomes]
rs7738952	0.95[AFR][1000 genomes]
rs7759402	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9285491	0.86[YRI][hapmap];0.84[AFR][1000 genomes]
rs9321734	0.85[AFR][1000 genomes]
rs9321736	0.85[EUR][1000 genomes]
rs9321737	0.88[AFR][1000 genomes]
rs9321738	0.98[AFR][1000 genomes]
rs9321740	0.97[AFR][1000 genomes]
rs9321741	0.98[AFR][1000 genomes]
rs9321744	0.81[JPT][hapmap]
rs9373240	0.97[AFR][1000 genomes]
rs9376438	0.88[AFR][1000 genomes]
rs9376441	0.93[YRI][hapmap];0.97[AFR][1000 genomes]
rs9385870	0.94[ASW][hapmap];1.00[LWK][hapmap];0.96[MKK][hapmap];0.90[YRI][hapmap];0.97[AFR][1000 genomes]
rs9389700	0.87[AFR][1000 genomes]
rs9389702	0.97[AFR][1000 genomes]
rs9399287	0.98[AFR][1000 genomes]
rs9484298	0.88[AFR][1000 genomes]
rs9495538	0.82[CEU][hapmap];0.85[TSI][hapmap];0.81[EUR][1000 genomes]
rs9495552	0.84[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869066	chr6:139777114-140639695	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	26 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:139957200-139976000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr6:139957800-139960600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr6:139958200-139963000	Enhancers	Primary neutrophils fromperipheralblood	blood
4	chr6:139958400-139960400	Enhancers	K562	blood
5	chr6:139958600-139965200	Weak transcription	Placenta Amnion	Placenta Amnion
6	chr6:139958800-139960800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr6:139958800-139967200	Enhancers	Primary monocytes fromperipheralblood	blood
8	chr6:139959200-139960600	Enhancers	Monocytes-CD14+_RO01746	blood
9	chr6:139959200-139961600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
10	chr6:139959400-139961800	Enhancers	Primary hematopoietic stem cells short term culture	blood
11	chr6:139959800-139965200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr6:139960000-139961400	Enhancers	Primary hematopoietic stem cells	blood
13	chr6:139960000-139965000	Weak transcription	Fetal Intestine Small	intestine

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