Variant report

Variant	rs9495538
Chromosome Location	chr6:139919937-139919938
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:139918023..139920121-chr6:139924090..139925630,2	K562	blood:
2	chr6:139768879..139771871-chr6:139917556..139920182,2	K562	blood:
3	chr6:139692350..139696074-chr6:139919477..139924298,5	MCF-7	breast:
4	chr6:139916889..139920627-chr6:139922127..139924078,3	K562	blood:

Variant related genes	Relation type
ENSG00000164442	Chromatin interaction

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs11155079	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12191119	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.97[LWK][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];0.98[TSI][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1541248	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.85[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4486037	0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4895572	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4895573	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6570368	0.82[EUR][1000 genomes]
rs6917245	0.82[EUR][1000 genomes]
rs6917394	0.82[EUR][1000 genomes]
rs6917655	0.81[EUR][1000 genomes]
rs6940157	0.82[EUR][1000 genomes]
rs7349945	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7759402	0.80[EUR][1000 genomes]
rs9321736	0.87[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9321745	0.88[ASW][hapmap]
rs9495557	0.88[ASW][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869066	chr6:139777114-140639695	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	26 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:55 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:139907600-139925200	Weak transcription	Aorta	Aorta
2	chr6:139908800-139920600	Enhancers	Fetal Intestine Small	intestine
3	chr6:139909400-139925200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr6:139909600-139923400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr6:139913000-139928600	Weak transcription	Ovary	ovary
6	chr6:139914400-139925200	Weak transcription	Spleen	Spleen
7	chr6:139915000-139921000	Enhancers	Colon Smooth Muscle	Colon
8	chr6:139915600-139920200	Enhancers	Breast Myoepithelial Primary Cells	Breast
9	chr6:139915600-139920800	Enhancers	Fetal Intestine Large	intestine
10	chr6:139916000-139921000	Enhancers	NHLF	lung
11	chr6:139916400-139922200	Weak transcription	Sigmoid Colon	Sigmoid Colon
12	chr6:139916800-139924000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
13	chr6:139917000-139922200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
14	chr6:139917600-139920200	Enhancers	Cortex derived primary cultured neurospheres	brain
15	chr6:139917600-139920200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
16	chr6:139917600-139920200	Enhancers	NH-A	brain
17	chr6:139917600-139920800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr6:139917800-139920200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
19	chr6:139918200-139921000	Enhancers	Fetal Stomach	stomach
20	chr6:139918400-139920200	Enhancers	Brain Angular Gyrus	brain
21	chr6:139918400-139920400	Enhancers	Fetal Brain Male	brain
22	chr6:139918400-139920600	Enhancers	Fetal Muscle Leg	muscle
23	chr6:139918600-139922000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
24	chr6:139918800-139925200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
25	chr6:139919000-139920000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
26	chr6:139919000-139920200	Enhancers	HSMM	muscle
27	chr6:139919200-139920400	Enhancers	NHDF-Ad	bronchial
28	chr6:139919200-139920800	Enhancers	Muscle Satellite Cultured Cells	--
29	chr6:139919200-139920800	Enhancers	Osteobl	bone
30	chr6:139919200-139923600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
31	chr6:139919200-139923600	Weak transcription	Fetal Heart	heart
32	chr6:139919200-139924000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
33	chr6:139919400-139920200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
34	chr6:139919400-139920600	Weak transcription	Placenta Amnion	Placenta Amnion
35	chr6:139919400-139920800	Enhancers	Rectal Smooth Muscle	rectum
36	chr6:139919400-139922200	Weak transcription	K562	blood
37	chr6:139919400-139925200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
38	chr6:139919400-139925200	Weak transcription	Esophagus	oesophagus
39	chr6:139919600-139920000	Weak transcription	Fetal Muscle Trunk	muscle
40	chr6:139919600-139920000	Weak transcription	Placenta	Placenta
41	chr6:139919600-139921200	Weak transcription	Monocytes-CD14+_RO01746	blood
42	chr6:139919600-139922200	Weak transcription	HSMMtube	muscle
43	chr6:139919600-139923400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
44	chr6:139919600-139923400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
45	chr6:139919600-139923400	Weak transcription	HUES6 Cell Line	embryonic stem cell
46	chr6:139919600-139924000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
47	chr6:139919600-139925200	Weak transcription	Brain Hippocampus Middle	brain
48	chr6:139919800-139920000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
49	chr6:139919800-139920800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
50	chr6:139919800-139922200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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