Variant report

Variant	rs4895573
Chromosome Location	chr6:139946525-139946526
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs11155079	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12191119	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1541248	0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4486037	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4895572	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6570368	0.82[EUR][1000 genomes]
rs6917245	0.82[EUR][1000 genomes]
rs6917394	0.82[EUR][1000 genomes]
rs6917655	0.81[EUR][1000 genomes]
rs6940157	0.82[EUR][1000 genomes]
rs7349945	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7759402	0.81[EUR][1000 genomes]
rs9321736	0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9495538	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869066	chr6:139777114-140639695	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	26 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:139944800-139949600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
2	chr6:139945200-139946800	Enhancers	Primary neutrophils fromperipheralblood	blood
3	chr6:139945400-139947400	Enhancers	Primary monocytes fromperipheralblood	blood
4	chr6:139946000-139948200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
5	chr6:139946200-139946800	Enhancers	Primary hematopoietic stem cells short term culture	blood
6	chr6:139946200-139946800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr6:139946200-139947000	Flanking Active TSS	K562	blood
8	chr6:139946200-139947400	Enhancers	Primary hematopoietic stem cells	blood
9	chr6:139946200-139948800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr6:139946200-139949200	Enhancers	iPS-18 Cell Line	embryonic stem cell
11	chr6:139946200-139949600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr6:139946400-139946600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
13	chr6:139946400-139946600	Enhancers	HepG2	liver
14	chr6:139946400-139947600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
15	chr6:139946400-139947800	Enhancers	Spleen	Spleen
16	chr6:139946400-139948600	Flanking Active TSS	Monocytes-CD14+_RO01746	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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