Variant report

Variant	rs9321745
Chromosome Location	chr6:139969639-139969640
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:139692331..139697169-chr6:139965661..139973666,12	K562	blood:
2	chr6:139957877..139959819-chr6:139968952..139970671,2	K562	blood:
3	chr6:139693523..139696953-chr6:139967326..139971343,4	K562	blood:
4	chr6:139960981..139963073-chr6:139968432..139971392,2	K562	blood:

Variant related genes	Relation type
ENSG00000164442	Chromatin interaction

Extended variants
information (count: 14 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs12191119	0.88[ASW][hapmap]
rs12527652	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17808072	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1936208	0.85[EUR][1000 genomes]
rs1936209	0.85[EUR][1000 genomes]
rs6905559	0.85[EUR][1000 genomes]
rs6933425	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7745195	0.85[CEU][hapmap];0.95[CHB][hapmap];0.91[JPT][hapmap];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7765897	0.84[EUR][1000 genomes]
rs9376442	0.96[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.87[MEX][hapmap];1.00[TSI][hapmap];0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9495538	0.88[ASW][hapmap]
rs9495557	0.88[ASW][hapmap];0.96[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];0.84[LWK][hapmap];1.00[MEX][hapmap];0.87[MKK][hapmap];1.00[TSI][hapmap];0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869066	chr6:139777114-140639695	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	26 gene(s)	inside rSNPs	diseases
2	nsv516840	chr6:139960833-140053704	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs9321745	TXLNB	cis	parietal	SCAN

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:139957200-139976000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr6:139966200-139974200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr6:139966400-139974000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr6:139966800-139974200	Weak transcription	Placenta Amnion	Placenta Amnion
5	chr6:139969200-139969800	Enhancers	HSMMtube	muscle
6	chr6:139969200-139970000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr6:139969200-139970000	Enhancers	Fetal Thymus	thymus
8	chr6:139969200-139970400	Enhancers	Primary hematopoietic stem cells	blood
9	chr6:139969200-139971000	Flanking Active TSS	K562	blood
10	chr6:139969200-139971800	Enhancers	Primary monocytes fromperipheralblood	blood
11	chr6:139969400-139969800	Enhancers	Primary hematopoietic stem cells short term culture	blood
12	chr6:139969400-139970000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
13	chr6:139969400-139970000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr6:139969400-139970000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
15	chr6:139969400-139970800	Enhancers	Primary neutrophils fromperipheralblood	blood
16	chr6:139969400-139972000	Weak transcription	Adipose Nuclei	Adipose
17	chr6:139969600-139970000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
18	chr6:139969600-139970200	Enhancers	HUES64 Cell Line	embryonic stem cell
19	chr6:139969600-139970200	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
20	chr6:139969600-139971000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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