Variant report

Variant	rs7745195
Chromosome Location	chr6:139975874-139975875
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:139969913..139972939-chr6:139974977..139978963,5	K562	blood:
2	chr6:139691043..139697550-chr6:139974067..139981700,17	MCF-7	breast:
3	chr6:139690842..139699833-chr6:139972012..139982796,35	MCF-7	breast:
4	chr6:139904084..139907083-chr6:139974866..139976418,2	K562	blood:
5	chr6:139970454..139973850-chr6:139975756..139978963,4	K562	blood:

Variant related genes	Relation type
ENSG00000164442	Chromatin interaction

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs12527652	0.85[CEU][hapmap];0.96[CHB][hapmap];0.91[JPT][hapmap];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17808072	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1936208	0.81[EUR][1000 genomes]
rs1936209	0.81[EUR][1000 genomes]
rs6905559	0.81[EUR][1000 genomes]
rs6933425	0.85[CEU][hapmap];0.96[CHB][hapmap];0.91[JPT][hapmap];0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7765897	0.80[EUR][1000 genomes]
rs9321745	0.85[CEU][hapmap];0.95[CHB][hapmap];0.91[JPT][hapmap];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9376442	0.88[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9495557	0.88[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869066	chr6:139777114-140639695	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	26 gene(s)	inside rSNPs	diseases
2	nsv516840	chr6:139960833-140053704	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:139957200-139976000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr6:139970000-139976000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr6:139974000-139977800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr6:139974000-139978200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr6:139974400-139976200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr6:139974400-139976200	Weak transcription	H1 Cell Line	embryonic stem cell
7	chr6:139974400-139980000	Weak transcription	Placenta Amnion	Placenta Amnion
8	chr6:139974600-139977000	Weak transcription	K562	blood
9	chr6:139974600-139977200	Enhancers	HUES64 Cell Line	embryonic stem cell
10	chr6:139974800-139976400	Weak transcription	HUES6 Cell Line	embryonic stem cell
11	chr6:139974800-139976400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
12	chr6:139974800-139977400	Enhancers	HUES48 Cell Line	embryonic stem cell
13	chr6:139975000-139976000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr6:139975000-139976000	Enhancers	Liver	Liver
15	chr6:139975000-139976200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
16	chr6:139975200-139976400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
17	chr6:139975200-139976400	Weak transcription	Duodenum Mucosa	Duodenum
18	chr6:139975400-139976000	Flanking Active TSS	Fetal Intestine Small	intestine
19	chr6:139975400-139976000	Flanking Active TSS	Rectal Mucosa Donor 29	rectum
20	chr6:139975400-139976200	Flanking Active TSS	HepG2	liver
21	chr6:139975600-139976000	Active TSS	Rectal Mucosa Donor 31	rectum
22	chr6:139975800-139976200	Active TSS	Fetal Intestine Large	intestine
23	chr6:139975800-139977400	Enhancers	Fetal Kidney	kidney

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