Variant report

Variant	rs6905559
Chromosome Location	chr6:139965122-139965123
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:139964170..139966634-chr6:139972599..139975105,2	K562	blood:
2	chr6:139965051..139967507-chr6:139970939..139973680,2	MCF-7	breast:
3	chr6:139692592..139694662-chr6:139962650..139965391,2	K562	blood:

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs12527652	0.85[EUR][1000 genomes]
rs17808072	0.85[EUR][1000 genomes]
rs1936208	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1936209	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58785671	0.80[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs6933425	0.85[EUR][1000 genomes]
rs7745195	0.81[EUR][1000 genomes]
rs7765897	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9321743	0.96[ASN][1000 genomes]
rs9321744	0.94[ASN][1000 genomes]
rs9321745	0.85[EUR][1000 genomes]
rs9376442	0.85[EUR][1000 genomes]
rs9484299	0.94[ASN][1000 genomes]
rs9495557	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869066	chr6:139777114-140639695	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	26 gene(s)	inside rSNPs	diseases
2	nsv516840	chr6:139960833-140053704	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:139957200-139976000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr6:139958600-139965200	Weak transcription	Placenta Amnion	Placenta Amnion
3	chr6:139958800-139967200	Enhancers	Primary monocytes fromperipheralblood	blood
4	chr6:139959800-139965200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr6:139962200-139965600	Weak transcription	HSMM	muscle
6	chr6:139962200-139969200	Enhancers	K562	blood
7	chr6:139962400-139965600	Weak transcription	HSMMtube	muscle
8	chr6:139962400-139967200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
9	chr6:139962600-139966200	Enhancers	Primary hematopoietic stem cells short term culture	blood
10	chr6:139963000-139966200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
11	chr6:139963400-139967200	Enhancers	Fetal Heart	heart
12	chr6:139963600-139969200	Weak transcription	Primary hematopoietic stem cells	blood
13	chr6:139964800-139965400	Enhancers	Primary neutrophils fromperipheralblood	blood
14	chr6:139964800-139965600	Enhancers	Fetal Intestine Large	intestine
15	chr6:139965000-139965200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr6:139965000-139965400	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
17	chr6:139965000-139965600	Enhancers	Lung	lung
18	chr6:139965000-139965600	Enhancers	Spleen	Spleen
19	chr6:139965000-139966800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
20	chr6:139965000-139966800	Enhancers	Fetal Intestine Small	intestine
21	chr6:139965000-139966800	Enhancers	Right Atrium	heart
22	chr6:139965000-139967200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
23	chr6:139965000-139967200	Enhancers	Colon Smooth Muscle	Colon
24	chr6:139965000-139967200	Enhancers	Fetal Stomach	stomach
25	chr6:139965000-139967200	Enhancers	Left Ventricle	heart
26	chr6:139965000-139967200	Enhancers	Rectal Smooth Muscle	rectum
27	chr6:139965000-139967200	Enhancers	Stomach Smooth Muscle	stomach

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