Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:139700080..139702623-chr6:139961683..139963316,2	K562	blood:
2	chr6:139960981..139963073-chr6:139968432..139971392,2	K562	blood:

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs12527652	0.84[CEU][hapmap];0.84[EUR][1000 genomes]
rs17808072	0.84[EUR][1000 genomes]
rs1936208	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1936209	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1936211	0.81[ASN][1000 genomes]
rs4896478	0.81[YRI][hapmap]
rs4896479	0.81[YRI][hapmap]
rs4896480	0.81[YRI][hapmap]
rs58785671	0.90[ASN][1000 genomes]
rs6905559	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6933425	0.84[CEU][hapmap];0.84[EUR][1000 genomes]
rs7745195	0.80[EUR][1000 genomes]
rs9321735	0.83[ASW][hapmap];0.81[YRI][hapmap]
rs9321743	0.90[ASN][1000 genomes]
rs9321744	0.82[CHB][hapmap];0.95[CHD][hapmap];0.91[JPT][hapmap];0.89[ASN][1000 genomes]
rs9321745	0.84[CEU][hapmap];0.84[GIH][hapmap];0.87[MEX][hapmap];0.86[TSI][hapmap];0.84[EUR][1000 genomes]
rs9376442	0.81[CEU][hapmap];0.84[GIH][hapmap];0.86[TSI][hapmap];0.84[EUR][1000 genomes]
rs9403095	0.83[ASW][hapmap];0.81[YRI][hapmap]
rs9484299	0.89[ASN][1000 genomes]
rs9495535	0.83[ASW][hapmap]
rs9495557	0.81[CEU][hapmap];0.84[GIH][hapmap];0.87[MEX][hapmap];0.86[TSI][hapmap];0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869066	chr6:139777114-140639695	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	26 gene(s)	inside rSNPs	diseases
2	nsv516840	chr6:139960833-140053704	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:139957200-139976000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr6:139958200-139963000	Enhancers	Primary neutrophils fromperipheralblood	blood
3	chr6:139958600-139965200	Weak transcription	Placenta Amnion	Placenta Amnion
4	chr6:139958800-139967200	Enhancers	Primary monocytes fromperipheralblood	blood
5	chr6:139959800-139965200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr6:139960000-139965000	Weak transcription	Fetal Intestine Small	intestine
7	chr6:139960600-139963400	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
8	chr6:139960800-139963000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr6:139961800-139962600	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
10	chr6:139962000-139963000	Enhancers	Primary B cells from cord blood	blood
11	chr6:139962000-139963600	Enhancers	Primary hematopoietic stem cells	blood
12	chr6:139962000-139965000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr6:139962200-139965600	Weak transcription	HSMM	muscle
14	chr6:139962200-139969200	Enhancers	K562	blood
15	chr6:139962400-139965000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr6:139962400-139965600	Weak transcription	HSMMtube	muscle
17	chr6:139962400-139967200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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