Variant report

Variant	rs4896479
Chromosome Location	chr6:139932889-139932890
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:139930810..139933752-chr6:140097356..140098943,2	K562	blood:
2	chr6:139695674..139697461-chr6:139931043..139933413,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000164442	Chromatin interaction

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs10223884	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12202000	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12203872	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12205687	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12211407	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1541249	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2327975	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2327976	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2876419	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4317424	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4419683	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4419684	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4557537	0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4895574	0.81[CEU][hapmap];0.82[EUR][1000 genomes]
rs4896478	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4896480	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4896483	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4896484	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7357040	0.82[AMR][1000 genomes]
rs7738952	0.82[EUR][1000 genomes]
rs9285491	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9321734	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9321735	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9321737	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9321738	0.83[EUR][1000 genomes]
rs9321739	0.87[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs9321740	0.82[EUR][1000 genomes]
rs9321741	0.82[EUR][1000 genomes]
rs9373239	0.86[AFR][1000 genomes];0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9373240	0.82[EUR][1000 genomes]
rs9376438	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9376441	0.82[EUR][1000 genomes]
rs9385870	0.81[CEU][hapmap];0.83[EUR][1000 genomes]
rs9389698	0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9389700	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9389702	0.82[EUR][1000 genomes]
rs9399287	0.83[EUR][1000 genomes]
rs9403095	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9484293	0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9484294	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9484295	0.94[AFR][1000 genomes];0.81[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9484298	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9495535	1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9495552	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869066	chr6:139777114-140639695	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	26 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:139929200-139941000	Weak transcription	Aorta	Aorta
2	chr6:139929200-139944000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr6:139931600-139933600	Enhancers	iPS-18 Cell Line	embryonic stem cell
4	chr6:139932000-139933600	Enhancers	HUES64 Cell Line	embryonic stem cell
5	chr6:139932000-139933800	Enhancers	Primary neutrophils fromperipheralblood	blood
6	chr6:139932200-139933600	Enhancers	iPS-20b Cell Line	embryonic stem cell
7	chr6:139932200-139933600	Enhancers	Primary monocytes fromperipheralblood	blood
8	chr6:139932200-139935000	Enhancers	Cortex derived primary cultured neurospheres	brain
9	chr6:139932400-139933400	Enhancers	HUES48 Cell Line	embryonic stem cell
10	chr6:139932400-139933600	Enhancers	ES-I3 Cell Line	embryonic stem cell
11	chr6:139932600-139933000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
12	chr6:139932600-139933400	Enhancers	HUES6 Cell Line	embryonic stem cell
13	chr6:139932600-139933400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
14	chr6:139932600-139933600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
15	chr6:139932600-139933600	Enhancers	iPS-15b Cell Line	embryonic stem cell
16	chr6:139932600-139933800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
17	chr6:139932800-139933000	Enhancers	Primary B cells from cord blood	blood
18	chr6:139932800-139933000	Enhancers	Pancreas	Pancrea
19	chr6:139932800-139933200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr6:139932800-139933200	Enhancers	Primary hematopoietic stem cells short term culture	blood
21	chr6:139932800-139933200	Flanking Active TSS	K562	blood
22	chr6:139932800-139933600	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
23	chr6:139932800-139934000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain

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