Variant report

Variant	rs9321739
Chromosome Location	chr6:139959161-139959162
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:139957877..139959819-chr6:139968952..139970671,2	K562	blood:
2	chr6:139958509..139960100-chr6:139965724..139967444,2	K562	blood:

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs10223884	0.85[EUR][1000 genomes]
rs12202000	0.87[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs12203872	0.87[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs12211407	0.85[EUR][1000 genomes]
rs1541249	0.85[EUR][1000 genomes]
rs2327975	0.85[EUR][1000 genomes]
rs2327976	0.85[EUR][1000 genomes]
rs2876419	0.85[EUR][1000 genomes]
rs4317424	0.85[EUR][1000 genomes]
rs4419683	0.85[EUR][1000 genomes]
rs4419684	0.85[EUR][1000 genomes]
rs4895574	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4896478	0.87[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs4896479	0.87[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs4896480	0.87[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs4896483	0.84[EUR][1000 genomes]
rs7383441	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7738637	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7738952	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9285491	0.84[EUR][1000 genomes]
rs9321734	0.84[EUR][1000 genomes]
rs9321735	0.87[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs9321737	0.85[EUR][1000 genomes]
rs9321738	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9321740	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9321741	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9373239	0.86[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs9373240	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9376438	0.85[EUR][1000 genomes]
rs9376441	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9385870	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9389700	0.85[EUR][1000 genomes]
rs9389702	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9399287	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9403095	0.87[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs9484293	0.81[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs9484294	0.83[EUR][1000 genomes]
rs9484295	0.81[AFR][1000 genomes]
rs9484298	0.85[EUR][1000 genomes]
rs9495552	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869066	chr6:139777114-140639695	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	26 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:139949800-139959400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
2	chr6:139957200-139976000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr6:139957800-139960600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr6:139958200-139963000	Enhancers	Primary neutrophils fromperipheralblood	blood
5	chr6:139958400-139960400	Enhancers	K562	blood
6	chr6:139958600-139965200	Weak transcription	Placenta Amnion	Placenta Amnion
7	chr6:139958800-139960800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr6:139958800-139967200	Enhancers	Primary monocytes fromperipheralblood	blood
9	chr6:139959000-139959800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links