Variant report

Variant	rs4895947
Chromosome Location	chr6:133284345-133284346
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:10)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:10 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:133283881..133284739-chr6:133360893..133361401,2	MCF-7	breast:
2	chr6:133283825..133284821-chr6:133874915..133875480,4	K562	blood:
3	chr6:133284240..133284797-chr6:133360868..133361418,2	K562	blood:
4	chr6:133283814..133284690-chr6:133833145..133834261,5	MCF-7	breast:
5	chr6:133283967..133284875-chr6:133689207..133690459,3	MCF-7	breast:
6	chr6:133275578..133277766-chr6:133282732..133284399,2	K562	blood:
7	chr6:133283886..133284848-chr6:133360811..133361796,7	MCF-7	breast:
8	chr6:133283739..133284591-chr6:133505537..133506147,2	MCF-7	breast:
9	chr6:133151125..133151898-chr6:133283825..133285077,5	MCF-7	breast:
10	chr6:133151975..133153613-chr6:133282539..133284979,2	K562	blood:

No data

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs17062040	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17062051	1.00[CEU][hapmap];0.91[CHD][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap]
rs58301574	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs67273918	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532069	chr6:132776411-133462292	Active TSS Strong transcription Weak transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
2	nsv1015742	chr6:132933666-133285852	Active TSS Flanking Active TSS Enhancers Strong transcription Weak transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	71 gene(s)	inside rSNPs	diseases
3	nsv428154	chr6:133271975-133522803	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:133280600-133284400	Enhancers	Primary hematopoietic stem cells short term culture	blood
2	chr6:133280800-133286200	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr6:133281200-133285000	Weak transcription	Cortex derived primary cultured neurospheres	brain
4	chr6:133281600-133285400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr6:133282600-133285000	Weak transcription	HSMMtube	muscle
6	chr6:133282600-133285200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr6:133282600-133285400	Weak transcription	Skeletal Muscle Male	skeletal muscle
8	chr6:133282800-133285000	Weak transcription	A549	lung
9	chr6:133282800-133285200	Weak transcription	Skeletal Muscle Female	skeletal muscle
10	chr6:133282800-133285200	Weak transcription	HSMM	muscle
11	chr6:133282800-133285200	Weak transcription	NH-A	brain
12	chr6:133282800-133285200	Weak transcription	Osteobl	bone
13	chr6:133282800-133285400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
14	chr6:133282800-133285600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr6:133282800-133289400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
16	chr6:133283000-133284600	Weak transcription	Fetal Muscle Leg	muscle
17	chr6:133283000-133285000	Weak transcription	Muscle Satellite Cultured Cells	--
18	chr6:133283000-133285200	Weak transcription	Psoas Muscle	Psoas
19	chr6:133283000-133285400	Weak transcription	Fetal Heart	heart
20	chr6:133283000-133288600	Weak transcription	HUES64 Cell Line	embryonic stem cell
21	chr6:133283000-133288800	Weak transcription	HUES48 Cell Line	embryonic stem cell
22	chr6:133283000-133289000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
23	chr6:133283000-133290000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
24	chr6:133283200-133285000	Weak transcription	HepG2	liver
25	chr6:133283200-133285200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
26	chr6:133283200-133288600	Weak transcription	HUES6 Cell Line	embryonic stem cell
27	chr6:133283200-133289200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
28	chr6:133283600-133284400	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Female	--
29	chr6:133283800-133285800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
30	chr6:133284200-133289400	Weak transcription	iPS-15b Cell Line	embryonic stem cell

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