Variant report

Variant	rs4897088
Chromosome Location	chr6:149490310-149490311
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:149484833..149486828-chr6:149488896..149490980,2	K562	blood:

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs4897081	0.82[JPT][hapmap]
rs6570947	0.82[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs6570948	0.82[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs9498229	0.88[ASN][1000 genomes]
rs9498230	0.95[ASN][1000 genomes]
rs9498234	0.82[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs9498236	0.82[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs9498237	0.82[AMR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1032319	chr6:149271433-149550525	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
2	nsv538470	chr6:149271433-149550525	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
3	nsv1024776	chr6:149398652-149654593	Weak transcription Active TSS Bivalent Enhancer Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:50 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:149484800-149491600	Weak transcription	Aorta	Aorta
2	chr6:149487800-149491200	Weak transcription	Right Atrium	heart
3	chr6:149488200-149490600	Weak transcription	NH-A	brain
4	chr6:149488200-149491200	Weak transcription	Lung	lung
5	chr6:149488200-149492000	Weak transcription	Brain Germinal Matrix	brain
6	chr6:149488200-149492400	Weak transcription	Colon Smooth Muscle	Colon
7	chr6:149488400-149490400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr6:149488400-149490800	Weak transcription	Rectal Smooth Muscle	rectum
9	chr6:149488400-149491000	Weak transcription	Fetal Stomach	stomach
10	chr6:149488600-149491000	Weak transcription	Brain Hippocampus Middle	brain
11	chr6:149488600-149491000	Weak transcription	Fetal Lung	lung
12	chr6:149488600-149491800	Weak transcription	Cortex derived primary cultured neurospheres	brain
13	chr6:149488600-149491800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
14	chr6:149488600-149492200	Weak transcription	Fetal Heart	heart
15	chr6:149489400-149490800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
16	chr6:149489600-149490400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
17	chr6:149489600-149490400	Enhancers	Primary T killer memory cells from peripheral blood	blood
18	chr6:149489600-149490600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
19	chr6:149489600-149490600	Enhancers	Primary T helper cells fromperipheralblood	blood
20	chr6:149489600-149490800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
21	chr6:149489600-149491000	Enhancers	Primary T helper naive cells from peripheral blood	blood
22	chr6:149489800-149490400	Enhancers	Primary hematopoietic stem cells short term culture	blood
23	chr6:149489800-149490400	Enhancers	Muscle Satellite Cultured Cells	--
24	chr6:149489800-149490600	Enhancers	Fetal Thymus	thymus
25	chr6:149489800-149490800	Enhancers	Primary T helper cells PMA-I stimulated	--
26	chr6:149489800-149490800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
27	chr6:149489800-149490800	Enhancers	Dnd41	blood
28	chr6:149489800-149491200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
29	chr6:149489800-149491400	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
30	chr6:149489800-149491600	Enhancers	Osteobl	bone
31	chr6:149489800-149492800	Enhancers	Liver	Liver
32	chr6:149489800-149492800	Enhancers	GM12878-XiMat	blood
33	chr6:149490000-149490400	Bivalent Enhancer	Primary B cells from peripheral blood	blood
34	chr6:149490000-149490400	Enhancers	Primary T cells from cord blood	blood
35	chr6:149490000-149490400	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
36	chr6:149490000-149490400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
37	chr6:149490000-149490600	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
38	chr6:149490000-149490800	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
39	chr6:149490000-149491000	Enhancers	Hela-S3	cervix
40	chr6:149490000-149491400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
41	chr6:149490000-149491400	Enhancers	Brain Substantia Nigra	brain
42	chr6:149490000-149491600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
43	chr6:149490000-149491600	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
44	chr6:149490000-149492200	Enhancers	Placenta	Placenta
45	chr6:149490000-149492400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
46	chr6:149490200-149490400	Enhancers	Monocytes-CD14+_RO01746	blood
47	chr6:149490200-149490600	Enhancers	Primary monocytes fromperipheralblood	blood
48	chr6:149490200-149490800	Enhancers	Stomach Smooth Muscle	stomach
49	chr6:149490200-149491600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
50	chr6:149490200-149492200	Enhancers	HSMM	muscle

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