Variant report

Variant	rs6570948
Chromosome Location	chr6:149469718-149469719
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:149468238..149470911-chr6:149471382..149475274,5	K562	blood:
2	chr6:149468297..149470497-chr6:149472232..149475176,2	K562	blood:

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs12192175	0.91[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs4530887	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4897081	0.82[JPT][hapmap]
rs4897085	0.91[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs4897088	0.82[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs6570947	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9498229	0.99[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9498230	0.99[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9498234	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9498236	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9498237	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9498238	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1032319	chr6:149271433-149550525	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
2	nsv538470	chr6:149271433-149550525	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
3	nsv1024776	chr6:149398652-149654593	Weak transcription Active TSS Bivalent Enhancer Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
4	nsv1034080	chr6:149456387-149480990	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:149467400-149470800	Enhancers	Primary T helper naive cells from peripheral blood	blood
2	chr6:149467600-149471800	Enhancers	Primary T regulatory cells fromperipheralblood	blood
3	chr6:149467600-149472600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
4	chr6:149467600-149476400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
5	chr6:149468000-149470600	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
6	chr6:149468000-149471200	Enhancers	Primary T helper cells fromperipheralblood	blood
7	chr6:149468200-149469800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
8	chr6:149468200-149470200	Enhancers	Primary monocytes fromperipheralblood	blood
9	chr6:149468200-149470200	Enhancers	Monocytes-CD14+_RO01746	blood
10	chr6:149468200-149470400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
11	chr6:149468200-149470600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
12	chr6:149468200-149470600	Enhancers	Primary T killer memory cells from peripheral blood	blood
13	chr6:149468200-149470800	Enhancers	Primary T cells from cord blood	blood
14	chr6:149468200-149470800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
15	chr6:149468200-149471000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
16	chr6:149468200-149472400	Enhancers	Primary T cells fromperipheralblood	blood
17	chr6:149468400-149470000	Enhancers	GM12878-XiMat	blood
18	chr6:149468400-149470400	Enhancers	Primary hematopoietic stem cells	blood
19	chr6:149468400-149470400	Enhancers	Dnd41	blood
20	chr6:149468400-149470600	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
21	chr6:149469000-149469800	Enhancers	K562	blood
22	chr6:149469000-149470000	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
23	chr6:149469200-149469800	Enhancers	Fetal Thymus	thymus
24	chr6:149469400-149474600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links