Variant report

Variant	rs9498238
Chromosome Location	chr6:149484165-149484166
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs12192175	0.87[EUR][1000 genomes]
rs4530887	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4897085	0.87[EUR][1000 genomes]
rs6570947	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6570948	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9498229	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9498230	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9498234	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9498236	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9498237	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1032319	chr6:149271433-149550525	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
2	nsv538470	chr6:149271433-149550525	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
3	nsv1024776	chr6:149398652-149654593	Weak transcription Active TSS Bivalent Enhancer Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:149476200-149487400	Weak transcription	Primary T cells fromperipheralblood	blood
2	chr6:149482600-149486800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr6:149483400-149488000	Weak transcription	Placenta	Placenta

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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