Variant report

Variant	rs9498229
Chromosome Location	chr6:149461967-149461968
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:149459494..149462226-chr6:149474198..149476247,2	K562	blood:
2	chr6:149452280..149455428-chr6:149458542..149462690,3	MCF-7	breast:
3	chr6:149352637..149354197-chr6:149460011..149462868,2	MCF-7	breast:
4	chr6:149460552..149463387-chr6:149463525..149465749,3	K562	blood:

Variant related genes	Relation type
ENSG00000236591	Chromatin interaction

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs12192175	0.90[AFR][1000 genomes];0.80[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4530887	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4897085	0.90[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs4897088	0.88[ASN][1000 genomes]
rs6570947	0.99[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6570948	0.99[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9498230	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9498234	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9498236	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9498237	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9498238	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1032319	chr6:149271433-149550525	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
2	nsv538470	chr6:149271433-149550525	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
3	nsv1024776	chr6:149398652-149654593	Weak transcription Active TSS Bivalent Enhancer Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
4	nsv1034080	chr6:149456387-149480990	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:149459000-149462000	Enhancers	Primary hematopoietic stem cells	blood
2	chr6:149460800-149462400	Flanking Active TSS	Primary T helper memory cells from peripheral blood 2	blood
3	chr6:149461000-149462200	Flanking Active TSS	Primary T helper memory cells from peripheral blood 1	blood
4	chr6:149461000-149462400	Enhancers	Primary hematopoietic stem cells short term culture	blood
5	chr6:149461000-149462400	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
6	chr6:149461000-149462400	Flanking Active TSS	GM12878-XiMat	blood
7	chr6:149461000-149462400	Flanking Active TSS	K562	blood
8	chr6:149461200-149462000	Flanking Active TSS	Primary T cells fromperipheralblood	blood
9	chr6:149461200-149462000	Flanking Active TSS	Primary T killer memory cells from peripheral blood	blood
10	chr6:149461200-149462400	Enhancers	Primary B cells from peripheral blood	blood
11	chr6:149461200-149462400	Flanking Active TSS	Primary T helper naive cells from peripheral blood	blood
12	chr6:149461200-149462400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
13	chr6:149461200-149462400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
14	chr6:149461200-149462400	Enhancers	Placenta	Placenta
15	chr6:149461400-149462000	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--
16	chr6:149461400-149462000	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
17	chr6:149461400-149462000	Flanking Active TSS	Primary Natural Killer cells fromperipheralblood	blood
18	chr6:149461400-149462000	Bivalent Enhancer	HepG2	liver
19	chr6:149461400-149462400	Flanking Active TSS	Primary T cells from cord blood	blood
20	chr6:149461400-149462400	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
21	chr6:149461600-149462000	Enhancers	Dnd41	blood
22	chr6:149461600-149462200	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
23	chr6:149461800-149462400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
24	chr6:149461800-149462600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
25	chr6:149461800-149462800	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
26	chr6:149461800-149468400	Weak transcription	Fetal Lung	lung

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