Variant report

Variant	rs4897085
Chromosome Location	chr6:149439722-149439723
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs12192175	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4415179	0.81[ASN][1000 genomes]
rs4530887	0.87[EUR][1000 genomes]
rs4897081	0.81[CHB][hapmap];1.00[JPT][hapmap]
rs6570947	0.91[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs6570948	0.91[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs6901019	0.81[CEU][hapmap]
rs7761119	0.84[CEU][hapmap]
rs9498229	0.90[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs9498230	0.90[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs9498234	0.88[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs9498236	0.88[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs9498237	0.88[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs9498238	0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1032319	chr6:149271433-149550525	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
2	nsv538470	chr6:149271433-149550525	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
3	nsv1024776	chr6:149398652-149654593	Weak transcription Active TSS Bivalent Enhancer Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:149433200-149443400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
2	chr6:149433800-149444400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
3	chr6:149435400-149440000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr6:149436200-149440000	Enhancers	K562	blood
5	chr6:149436400-149442600	Enhancers	Primary hematopoietic stem cells	blood
6	chr6:149437400-149440200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
7	chr6:149437400-149440200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr6:149437400-149444400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
9	chr6:149437600-149440000	Weak transcription	Monocytes-CD14+_RO01746	blood
10	chr6:149437800-149440000	Weak transcription	Primary monocytes fromperipheralblood	blood
11	chr6:149438400-149440600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
12	chr6:149439600-149441400	Enhancers	Primary hematopoietic stem cells short term culture	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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