Variant report

Variant	rs4897097
Chromosome Location	chr6:149573828-149573829
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs11966037	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12191351	0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4897095	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4897096	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6570954	0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6900499	0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6935536	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6937702	0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7748981	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9377199	0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9377204	0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9390663	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9485360	0.90[AFR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9485361	0.93[CHB][hapmap];1.00[JPT][hapmap];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9485362	0.96[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9498262	0.80[CEU][hapmap];0.88[CHB][hapmap];0.94[JPT][hapmap]
rs9498266	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AFR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024776	chr6:149398652-149654593	Weak transcription Active TSS Bivalent Enhancer Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:149568400-149575200	Weak transcription	Spleen	Spleen
2	chr6:149568800-149581200	Weak transcription	Right Atrium	heart
3	chr6:149570200-149576200	Weak transcription	Fetal Lung	lung
4	chr6:149570600-149574000	Weak transcription	Adipose Nuclei	Adipose
5	chr6:149570800-149574600	Enhancers	Primary monocytes fromperipheralblood	blood
6	chr6:149570800-149581600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
7	chr6:149570800-149581600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
8	chr6:149571000-149576800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
9	chr6:149571000-149582200	Weak transcription	Primary B cells from peripheral blood	blood
10	chr6:149571200-149575400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr6:149571200-149577000	Weak transcription	Primary hematopoietic stem cells	blood
12	chr6:149572600-149574600	Enhancers	Monocytes-CD14+_RO01746	blood
13	chr6:149573800-149574200	Enhancers	Primary neutrophils fromperipheralblood	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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