Variant report

Variant	rs9390663
Chromosome Location	chr6:149570735-149570736
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:149569866..149572725-chr6:149580953..149582699,2	K562	blood:
2	chr6:149563609..149567271-chr6:149569971..149572610,3	K562	blood:

Variant related genes	Relation type
ENSG00000225924	Chromatin interaction

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs11966037	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12191351	0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4897095	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4897096	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4897097	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6570954	0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6900499	0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6935536	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6937702	0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7748981	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9377199	0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9377204	0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9485360	0.97[AFR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9485361	0.93[CHB][hapmap];1.00[JPT][hapmap];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9485362	0.91[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9498262	0.88[CHB][hapmap];0.94[JPT][hapmap]
rs9498266	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AFR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024776	chr6:149398652-149654593	Weak transcription Active TSS Bivalent Enhancer Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:40 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:149567200-149571000	Enhancers	Primary B cells from peripheral blood	blood
2	chr6:149568000-149570800	Enhancers	Primary T cells from cord blood	blood
3	chr6:149568400-149575200	Weak transcription	Spleen	Spleen
4	chr6:149568800-149581200	Weak transcription	Right Atrium	heart
5	chr6:149569200-149571000	Enhancers	Primary T cells fromperipheralblood	blood
6	chr6:149569600-149570800	Enhancers	Primary T helper naive cells from peripheral blood	blood
7	chr6:149569600-149570800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
8	chr6:149569600-149570800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
9	chr6:149569600-149570800	Enhancers	Primary T regulatory cells fromperipheralblood	blood
10	chr6:149569600-149571000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
11	chr6:149569600-149571000	Enhancers	Primary T helper cells fromperipheralblood	blood
12	chr6:149569600-149571200	Enhancers	Primary T helper cells PMA-I stimulated	--
13	chr6:149569800-149570800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
14	chr6:149569800-149570800	Enhancers	Rectal Mucosa Donor 29	rectum
15	chr6:149569800-149570800	Enhancers	K562	blood
16	chr6:149569800-149571000	Enhancers	Primary T killer memory cells from peripheral blood	blood
17	chr6:149569800-149571000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
18	chr6:149569800-149571000	Enhancers	Colonic Mucosa	Colon
19	chr6:149569800-149571000	Enhancers	Fetal Intestine Large	intestine
20	chr6:149569800-149571000	Enhancers	Hela-S3	cervix
21	chr6:149569800-149571200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr6:149569800-149571200	Enhancers	Primary hematopoietic stem cells short term culture	blood
23	chr6:149569800-149571200	Enhancers	Rectal Mucosa Donor 31	rectum
24	chr6:149569800-149571400	Enhancers	Sigmoid Colon	Sigmoid Colon
25	chr6:149569800-149571400	Enhancers	Stomach Mucosa	stomach
26	chr6:149569800-149571600	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
27	chr6:149569800-149572600	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
28	chr6:149570000-149570800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
29	chr6:149570000-149571200	Enhancers	Primary hematopoietic stem cells	blood
30	chr6:149570000-149571200	Enhancers	HMEC	breast
31	chr6:149570200-149571000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
32	chr6:149570200-149572600	Enhancers	HepG2	liver
33	chr6:149570200-149576200	Weak transcription	Fetal Lung	lung
34	chr6:149570400-149570800	Flanking Bivalent TSS/Enh	ES-UCSF4 Cell Line	embryonic stem cell
35	chr6:149570400-149570800	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
36	chr6:149570400-149570800	Flanking Active TSS	Primary monocytes fromperipheralblood	blood
37	chr6:149570400-149570800	Active TSS	Brain Anterior Caudate	brain
38	chr6:149570400-149571000	Active TSS	Brain Hippocampus Middle	brain
39	chr6:149570600-149571200	Enhancers	Primary B cells from cord blood	blood
40	chr6:149570600-149574000	Weak transcription	Adipose Nuclei	Adipose

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links