Variant report

Variant	rs9377204
Chromosome Location	chr6:149587194-149587195
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:149585876..149588526-chr6:149590777..149593659,3	K562	blood:

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs11966037	0.94[CHB][hapmap];0.83[JPT][hapmap]
rs4897095	0.94[CHB][hapmap];0.82[JPT][hapmap]
rs4897096	0.94[CHB][hapmap];0.82[JPT][hapmap]
rs4897097	0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4897103	0.80[ASN][1000 genomes]
rs6935536	0.94[CHB][hapmap];0.82[JPT][hapmap]
rs7748981	0.94[CHB][hapmap];0.82[JPT][hapmap]
rs9390663	0.94[CHB][hapmap];0.83[JPT][hapmap];0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9485361	0.86[CHB][hapmap];0.81[JPT][hapmap]
rs9485362	0.88[CHB][hapmap];0.83[JPT][hapmap]
rs9498262	0.82[CHB][hapmap]
rs9498266	0.94[CHB][hapmap];0.82[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024776	chr6:149398652-149654593	Weak transcription Active TSS Bivalent Enhancer Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:149575400-149589200	Weak transcription	Spleen	Spleen
2	chr6:149581600-149587200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
3	chr6:149584400-149587400	Enhancers	Primary T helper cells PMA-I stimulated	--
4	chr6:149584400-149587400	Enhancers	Primary T regulatory cells fromperipheralblood	blood
5	chr6:149584600-149587200	Enhancers	Primary T helper naive cells from peripheral blood	blood
6	chr6:149584600-149587800	Enhancers	Primary T helper cells fromperipheralblood	blood
7	chr6:149584800-149588200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
8	chr6:149585000-149587200	Enhancers	Fetal Thymus	thymus
9	chr6:149585200-149587400	Enhancers	Primary T cells from cord blood	blood
10	chr6:149586400-149592600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
11	chr6:149586600-149587200	Enhancers	Monocytes-CD14+_RO01746	blood
12	chr6:149586600-149587400	Enhancers	GM12878-XiMat	blood
13	chr6:149586600-149589000	Enhancers	Primary B cells from peripheral blood	blood
14	chr6:149586600-149592200	Enhancers	Primary B cells from cord blood	blood
15	chr6:149586600-149597000	Enhancers	Primary monocytes fromperipheralblood	blood
16	chr6:149586800-149587200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
17	chr6:149586800-149588600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
18	chr6:149586800-149592400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
19	chr6:149586800-149592400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
20	chr6:149587000-149592000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
21	chr6:149587000-149592200	Weak transcription	Primary T cells fromperipheralblood	blood

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