Variant report

Variant	rs4897102
Chromosome Location	chr6:149589969-149589970
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs1001965	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1446561	0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1446562	0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2011315	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2166493	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs35552421	0.82[ASN][1000 genomes]
rs4609053	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4897099	0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4897103	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4897104	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4897105	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4897106	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4897109	0.82[ASN][1000 genomes]
rs4897110	0.86[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs6570957	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6570958	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6570961	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6570962	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6899998	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6903389	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6904464	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6906793	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6907145	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6907747	0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6908247	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6908296	0.80[ASN][1000 genomes]
rs6912297	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6912567	0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6912622	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6921428	0.83[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs6922846	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6928940	0.80[ASN][1000 genomes]
rs6929714	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6938137	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7756413	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9285518	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9322171	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9390669	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9404024	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9404025	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs999120	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024776	chr6:149398652-149654593	Weak transcription Active TSS Bivalent Enhancer Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:149586400-149592600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
2	chr6:149586600-149592200	Enhancers	Primary B cells from cord blood	blood
3	chr6:149586600-149597000	Enhancers	Primary monocytes fromperipheralblood	blood
4	chr6:149586800-149592400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
5	chr6:149586800-149592400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
6	chr6:149587000-149592000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
7	chr6:149587000-149592200	Weak transcription	Primary T cells fromperipheralblood	blood
8	chr6:149587200-149591800	Weak transcription	Fetal Thymus	thymus
9	chr6:149587200-149592000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
10	chr6:149587200-149592600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
11	chr6:149587400-149591800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
12	chr6:149587400-149592000	Weak transcription	Primary T helper cells PMA-I stimulated	--
13	chr6:149587400-149592400	Weak transcription	Primary T cells from cord blood	blood
14	chr6:149588200-149591800	Enhancers	Primary neutrophils fromperipheralblood	blood
15	chr6:149588200-149591800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
16	chr6:149588200-149592000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
17	chr6:149588400-149592400	Weak transcription	Primary T helper cells fromperipheralblood	blood
18	chr6:149588600-149592200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
19	chr6:149588800-149591200	Weak transcription	Primary hematopoietic stem cells	blood
20	chr6:149588800-149591800	Weak transcription	GM12878-XiMat	blood
21	chr6:149588800-149591800	Enhancers	Monocytes-CD14+_RO01746	blood
22	chr6:149588800-149592600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
23	chr6:149589000-149591800	Weak transcription	Primary B cells from peripheral blood	blood
24	chr6:149589400-149590200	Enhancers	Fetal Heart	heart
25	chr6:149589400-149594200	Weak transcription	Spleen	Spleen

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