Variant report

Variant	rs4897110
Chromosome Location	chr6:149603097-149603098
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:149599433..149601529-chr6:149602201..149603992,3	MCF-7	breast:

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs1001965	0.80[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs11966037	0.87[JPT][hapmap]
rs1446561	0.94[AMR][1000 genomes];0.84[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1446562	0.94[AMR][1000 genomes];0.84[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2011315	0.86[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs2166493	0.86[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs35552421	0.84[ASN][1000 genomes]
rs4609053	0.84[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs4897095	0.86[JPT][hapmap]
rs4897096	0.86[JPT][hapmap]
rs4897099	0.95[ASN][1000 genomes]
rs4897102	0.86[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs4897103	0.84[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs4897104	0.82[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs4897105	0.82[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs4897106	0.82[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs4897109	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6570957	0.98[ASN][1000 genomes]
rs6570958	0.82[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs6570961	0.82[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs6570962	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6899998	0.82[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs6903389	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6904464	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6906793	0.98[ASN][1000 genomes]
rs6907145	0.83[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs6907747	0.87[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs6908247	0.80[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs6908296	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6912297	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6912567	0.94[AMR][1000 genomes];0.84[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6912622	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6921428	0.84[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6922846	0.82[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs6928940	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6929714	0.80[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs6935536	0.86[JPT][hapmap]
rs6938137	0.84[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs7748981	0.86[JPT][hapmap]
rs7756413	0.87[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs9285518	0.84[ASN][1000 genomes]
rs9322171	0.84[ASN][1000 genomes]
rs9390663	0.87[JPT][hapmap]
rs9390669	0.98[ASN][1000 genomes]
rs9404025	0.84[ASN][1000 genomes]
rs9485361	0.85[JPT][hapmap]
rs9485362	0.87[JPT][hapmap]
rs9498262	0.80[JPT][hapmap]
rs9498266	0.86[JPT][hapmap]
rs999120	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024776	chr6:149398652-149654593	Weak transcription Active TSS Bivalent Enhancer Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:149602000-149603200	Weak transcription	Primary monocytes fromperipheralblood	blood
2	chr6:149603000-149603400	Enhancers	Primary neutrophils fromperipheralblood	blood

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