Variant report

Variant	rs9285518
Chromosome Location	chr6:149594286-149594287
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:149591367..149593553-chr6:149594153..149597029,2	K562	blood:

Extended variants
information (count: 42 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs1001965	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs13203475	0.90[CHB][hapmap];0.90[CHD][hapmap]
rs1446561	0.83[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs1446562	0.83[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs2011315	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2166493	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4609053	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4897099	0.82[ASN][1000 genomes]
rs4897102	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4897103	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4897104	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4897105	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4897106	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4897109	0.83[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs4897110	0.84[ASN][1000 genomes]
rs6570957	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6570958	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6570961	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6570962	0.86[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs6899998	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6903389	0.86[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs6904464	0.86[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs6906793	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6907145	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6907747	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6908247	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6908296	0.86[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs6912297	0.85[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs6912567	0.83[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs6912622	0.85[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs6921428	0.83[ASN][1000 genomes]
rs6922846	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6928940	0.85[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs6929714	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6938137	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7756413	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9322171	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9390669	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9404024	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9404025	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs999120	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024776	chr6:149398652-149654593	Weak transcription Active TSS Bivalent Enhancer Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs9285518	LRP11	cis	cerebellum	SCAN
rs9285518	MTHFD1L	cis	parietal	SCAN

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:149586600-149597000	Enhancers	Primary monocytes fromperipheralblood	blood
2	chr6:149591800-149594600	Enhancers	Fetal Thymus	thymus
3	chr6:149591800-149594800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
4	chr6:149591800-149595000	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
5	chr6:149591800-149595600	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
6	chr6:149591800-149596600	Enhancers	Primary B cells from peripheral blood	blood
7	chr6:149592000-149595000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
8	chr6:149592000-149595000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
9	chr6:149592000-149596200	Enhancers	Primary hematopoietic stem cells short term culture	blood
10	chr6:149592200-149595000	Enhancers	Primary T cells fromperipheralblood	blood
11	chr6:149592200-149596200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
12	chr6:149592400-149594800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
13	chr6:149592400-149594800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
14	chr6:149592400-149594800	Enhancers	Primary T helper cells fromperipheralblood	blood
15	chr6:149592400-149595000	Enhancers	Primary T cells from cord blood	blood
16	chr6:149592400-149595000	Enhancers	Primary T killer memory cells from peripheral blood	blood
17	chr6:149592600-149596200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
18	chr6:149592600-149596200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
19	chr6:149593200-149594600	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
20	chr6:149593200-149595000	Enhancers	Primary T helper naive cells from peripheral blood	blood
21	chr6:149593200-149595400	Enhancers	Primary T regulatory cells fromperipheralblood	blood
22	chr6:149593400-149595000	Enhancers	GM12878-XiMat	blood
23	chr6:149593400-149596200	Enhancers	Primary hematopoietic stem cells	blood
24	chr6:149593600-149595000	Enhancers	Primary T helper cells PMA-I stimulated	--
25	chr6:149594000-149596200	Enhancers	Primary B cells from cord blood	blood
26	chr6:149594200-149594600	Enhancers	Thymus	Thymus
27	chr6:149594200-149594800	Enhancers	Spleen	Spleen
28	chr6:149594200-149595000	Enhancers	Fetal Heart	heart

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links