Variant report

Variant	rs4902551
Chromosome Location	chr14:68656646-68656647
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:17)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:17 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr14:68409262..68413026-chr14:68656289..68660234,5	MCF-7	breast:
2	chr14:68629386..68636406-chr14:68656636..68661805,14	MCF-7	breast:
3	chr14:68656552..68658635-chr14:68660275..68661944,3	MCF-7	breast:
4	chr14:68635724..68652229-chr14:68652309..68662207,28	MCF-7	breast:
5	chr14:68655604..68658456-chr14:68831451..68833713,2	MCF-7	breast:
6	chr14:68602495..68610533-chr14:68655867..68660749,19	MCF-7	breast:
7	chr14:68656043..68661099-chr14:68710391..68716081,7	MCF-7	breast:
8	chr14:68642568..68644686-chr14:68655694..68658682,2	MCF-7	breast:
9	chr14:68615352..68617633-chr14:68655816..68658975,3	MCF-7	breast:
10	chr14:68404009..68415107-chr14:68656381..68664155,17	MCF-7	breast:
11	chr14:68433451..68436244-chr14:68656284..68658586,2	MCF-7	breast:
12	chr14:68656551..68662158-chr14:69259506..69264057,11	MCF-7	breast:
13	chr14:68601506..68610081-chr14:68654290..68661321,21	MCF-7	breast:
14	chr14:68655659..68659360-chr14:69256551..69258776,5	MCF-7	breast:
15	chr14:68624965..68627608-chr14:68656572..68658244,2	MCF-7	breast:
16	chr14:68656161..68657684-chr14:68695768..68697616,2	MCF-7	breast:
17	chr14:68655074..68665772-chr14:68705598..68717948,30	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000185650	Chromatin interaction
ENSG00000244677	Chromatin interaction

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs10144531	0.93[AFR][1000 genomes]
rs7143425	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869154	chr14:68366754-69041768	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:68641400-68658000	Weak transcription	Rectal Mucosa Donor 29	rectum
2	chr14:68642400-68659800	Weak transcription	Pancreas	Pancrea
3	chr14:68647000-68676600	Weak transcription	Primary B cells from cord blood	blood
4	chr14:68648600-68659600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
5	chr14:68649000-68659400	Weak transcription	HUES64 Cell Line	embryonic stem cell
6	chr14:68649400-68658000	Weak transcription	Rectal Smooth Muscle	rectum
7	chr14:68649400-68677000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr14:68649600-68657200	Weak transcription	Fetal Lung	lung
9	chr14:68649800-68660400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr14:68650000-68660800	Weak transcription	Sigmoid Colon	Sigmoid Colon
11	chr14:68651200-68675000	Weak transcription	Primary hematopoietic stem cells	blood
12	chr14:68653000-68658200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr14:68653600-68658200	Weak transcription	Muscle Satellite Cultured Cells	--
14	chr14:68654000-68658200	Weak transcription	HSMMtube	muscle
15	chr14:68655400-68658800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
16	chr14:68655400-68662400	Enhancers	Fetal Intestine Small	intestine
17	chr14:68655600-68659400	Weak transcription	HUES48 Cell Line	embryonic stem cell
18	chr14:68655600-68659400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
19	chr14:68655600-68660000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
20	chr14:68655800-68656800	Weak transcription	A549	lung
21	chr14:68655800-68658800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
22	chr14:68655800-68659600	Weak transcription	HUES6 Cell Line	embryonic stem cell
23	chr14:68655800-68660000	Weak transcription	H9 Cell Line	embryonic stem cell
24	chr14:68655800-68661000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
25	chr14:68656200-68657200	Weak transcription	Liver	Liver
26	chr14:68656400-68657400	Enhancers	Stomach Mucosa	stomach
27	chr14:68656400-68658600	Enhancers	Fetal Intestine Large	intestine

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