Variant report

Variant	rs7143425
Chromosome Location	chr14:68637725-68637726
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:68637477..68641965-chr14:68646902..68653784,8	MCF-7	breast:
2	chr14:68637415..68639696-chr14:69260501..69262950,2	MCF-7	breast:
3	chr14:68635724..68652229-chr14:68652309..68662207,28	MCF-7	breast:
4	chr14:68636645..68639449-chr14:68640547..68642862,3	MCF-7	breast:
5	chr14:68637720..68641330-chr14:68657106..68660003,5	MCF-7	breast:
6	chr14:68633202..68635028-chr14:68637534..68639767,2	K562	blood:

Variant related genes	Relation type
ENSG00000185650	Chromatin interaction

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs10146929	1.00[EUR][1000 genomes]
rs10151522	0.91[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs17104818	1.00[EUR][1000 genomes]
rs35217922	1.00[EUR][1000 genomes]
rs4902551	1.00[AMR][1000 genomes]
rs7153799	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869154	chr14:68366754-69041768	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
2	nsv1048794	chr14:68614152-68649231	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:68629600-68642200	Enhancers	Fetal Intestine Large	intestine
2	chr14:68629600-68642400	Enhancers	Fetal Intestine Small	intestine
3	chr14:68630600-68642400	Enhancers	Stomach Mucosa	stomach
4	chr14:68632400-68641200	Enhancers	Rectal Mucosa Donor 31	rectum
5	chr14:68632800-68639400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
6	chr14:68634000-68637800	Enhancers	Colon Smooth Muscle	Colon
7	chr14:68634400-68638200	Enhancers	Rectal Smooth Muscle	rectum
8	chr14:68634400-68640200	Weak transcription	Colonic Mucosa	Colon
9	chr14:68635400-68648200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr14:68635800-68638800	Weak transcription	Duodenum Smooth Muscle	Duodenum
11	chr14:68636000-68638800	Weak transcription	Muscle Satellite Cultured Cells	--
12	chr14:68636000-68638800	Weak transcription	Fetal Stomach	stomach
13	chr14:68636000-68640400	Weak transcription	Sigmoid Colon	Sigmoid Colon
14	chr14:68636000-68644000	Weak transcription	Psoas Muscle	Psoas
15	chr14:68636200-68638800	Weak transcription	Duodenum Mucosa	Duodenum
16	chr14:68636200-68638800	Weak transcription	Stomach Smooth Muscle	stomach
17	chr14:68636200-68639000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
18	chr14:68636200-68644400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
19	chr14:68636200-68648000	Weak transcription	HSMM	muscle
20	chr14:68636400-68638600	Enhancers	HepG2	liver
21	chr14:68636400-68639600	Weak transcription	Ovary	ovary
22	chr14:68636600-68638800	Weak transcription	Pancreatic Islets	Pancreatic Islet
23	chr14:68636600-68640000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
24	chr14:68637000-68638800	Weak transcription	Fetal Kidney	kidney
25	chr14:68637000-68638800	Weak transcription	Fetal Lung	lung
26	chr14:68637000-68639600	Weak transcription	Small Intestine	intestine
27	chr14:68637200-68638800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
28	chr14:68637200-68639200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
29	chr14:68637600-68637800	Enhancers	Liver	Liver
30	chr14:68637600-68637800	Enhancers	Gastric	stomach
31	chr14:68637600-68637800	Enhancers	Rectal Mucosa Donor 29	rectum
32	chr14:68637600-68637800	Flanking Active TSS	A549	lung
33	chr14:68637600-68638600	Enhancers	Pancreas	Pancrea

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