Variant report

Variant	rs17104818
Chromosome Location	chr14:68438071-68438072
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:68405721..68408476-chr14:68436012..68438843,2	MCF-7	breast:
2	chr14:68436786..68439178-chr14:68441166..68444882,3	MCF-7	breast:
3	chr14:68436871..68439999-chr14:69260948..69263315,4	MCF-7	breast:
4	chr14:68436875..68439784-chr14:68657602..68660339,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000185650	Chromatin interaction

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10144531	1.00[AMR][1000 genomes]
rs10146929	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10151522	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13353140	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17104702	1.00[AMR][1000 genomes]
rs28451245	1.00[AMR][1000 genomes]
rs28479359	1.00[AMR][1000 genomes]
rs28834533	1.00[AMR][1000 genomes]
rs7143425	1.00[EUR][1000 genomes]
rs7153799	0.93[AFR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869154	chr14:68366754-69041768	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:68429400-68445200	Weak transcription	Ovary	ovary
2	chr14:68429600-68444400	Weak transcription	Primary hematopoietic stem cells	blood
3	chr14:68432000-68438200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr14:68432400-68439000	Weak transcription	Small Intestine	intestine
5	chr14:68432600-68438400	Weak transcription	Sigmoid Colon	Sigmoid Colon
6	chr14:68432600-68438800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr14:68433400-68438800	Weak transcription	Rectal Mucosa Donor 29	rectum
8	chr14:68433400-68444000	Weak transcription	Fetal Stomach	stomach
9	chr14:68433600-68439000	Weak transcription	Fetal Lung	lung
10	chr14:68434400-68438600	Weak transcription	Stomach Mucosa	stomach
11	chr14:68434600-68438400	Weak transcription	Duodenum Mucosa	Duodenum
12	chr14:68434600-68438600	Weak transcription	Rectal Mucosa Donor 31	rectum
13	chr14:68435000-68438800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
14	chr14:68436000-68440200	Enhancers	Colon Smooth Muscle	Colon
15	chr14:68436200-68438800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
16	chr14:68436600-68439000	Enhancers	HUES48 Cell Line	embryonic stem cell
17	chr14:68436600-68439200	Enhancers	iPS-15b Cell Line	embryonic stem cell
18	chr14:68436800-68438600	Enhancers	iPS-18 Cell Line	embryonic stem cell
19	chr14:68436800-68438800	Enhancers	ES-I3 Cell Line	embryonic stem cell
20	chr14:68436800-68439000	Enhancers	HUES64 Cell Line	embryonic stem cell
21	chr14:68436800-68439000	Enhancers	Duodenum Smooth Muscle	Duodenum
22	chr14:68436800-68439400	Enhancers	HUES6 Cell Line	embryonic stem cell
23	chr14:68436800-68439400	Enhancers	Rectal Smooth Muscle	rectum
24	chr14:68437000-68440400	Enhancers	Fetal Intestine Small	intestine
25	chr14:68437200-68438200	Weak transcription	H1 Cell Line	embryonic stem cell
26	chr14:68437200-68438800	Enhancers	A549	lung
27	chr14:68437600-68439400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
28	chr14:68437800-68439000	Enhancers	Osteobl	bone
29	chr14:68437800-68439200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
30	chr14:68437800-68439600	Enhancers	HMEC	breast
31	chr14:68437800-68440000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
32	chr14:68437800-68440000	Enhancers	NHEK	skin
33	chr14:68437800-68440400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
34	chr14:68438000-68439400	Enhancers	Fetal Intestine Large	intestine
35	chr14:68438000-68439600	Enhancers	iPS-20b Cell Line	embryonic stem cell

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