Variant report

Variant	rs10144531
Chromosome Location	chr14:68659202-68659203
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:38)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:38 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr14:68409262..68413026-chr14:68656289..68660234,5	MCF-7	breast:
2	chr14:68629386..68636406-chr14:68656636..68661805,14	MCF-7	breast:
3	chr14:68658060..68659603-chr14:69279653..69281747,2	MCF-7	breast:
4	chr14:68658495..68660422-chr14:75724440..75726686,2	MCF-7	breast:
5	chr14:68657222..68663496-chr14:68695468..68701015,13	MCF-7	breast:
6	chr14:68635724..68652229-chr14:68652309..68662207,28	MCF-7	breast:
7	chr14:68554904..68556745-chr14:68657326..68660228,3	MCF-7	breast:
8	chr14:68610783..68613857-chr14:68656944..68660243,4	MCF-7	breast:
9	chr14:68657619..68661211-chr14:68772709..68775364,5	MCF-7	breast:
10	chr14:68658527..68664263-chr14:68695508..68700857,17	MCF-7	breast:
11	chr14:68658549..68661860-chr14:69250890..69254751,3	MCF-7	breast:
12	chr14:68602495..68610533-chr14:68655867..68660749,19	MCF-7	breast:
13	chr14:68631283..68635497-chr14:68656962..68661024,3	MCF-7	breast:
14	chr14:68657499..68660189-chr14:68663923..68666460,2	MCF-7	breast:
15	chr14:68656043..68661099-chr14:68710391..68716081,7	MCF-7	breast:
16	chr14:68637720..68641330-chr14:68657106..68660003,5	MCF-7	breast:
17	chr14:68657173..68659585-chr14:68681483..68683101,2	MCF-7	breast:
18	chr14:68657329..68659380-chr14:69264255..69267196,2	MCF-7	breast:
19	chr14:68659031..68663058-chr14:69251667..69256012,5	MCF-7	breast:
20	chr14:68658576..68662447-chr14:68675524..68680933,7	MCF-7	breast:
21	chr14:68404009..68415107-chr14:68656381..68664155,17	MCF-7	breast:
22	chr14:68656551..68662158-chr14:69259506..69264057,11	MCF-7	breast:
23	chr14:68436875..68439784-chr14:68657602..68660339,2	MCF-7	breast:
24	chr14:68658171..68661273-chr14:68720781..68724443,6	MCF-7	breast:
25	chr14:68657723..68660507-chr14:69282289..69285612,3	MCF-7	breast:
26	chr14:68644898..68647865-chr14:68656989..68659986,2	K562	blood:
27	chr14:68601506..68610081-chr14:68654290..68661321,21	MCF-7	breast:
28	chr14:68655659..68659360-chr14:69256551..69258776,5	MCF-7	breast:
29	chr14:68656896..68664157-chr14:69254996..69262940,23	MCF-7	breast:
30	chr14:68657382..68663307-chr14:68771021..68776308,9	MCF-7	breast:
31	chr14:68549588..68551587-chr14:68658498..68660116,2	MCF-7	breast:
32	chr14:68431871..68434787-chr14:68656702..68659683,2	MCF-7	breast:
33	chr14:68658128..68659209-chr14:68698804..68699854,3	MCF-7	breast:
34	chr14:68657473..68659423-chr9:115142418..115144563,3	MCF-7	breast:
35	chr14:68655074..68665772-chr14:68705598..68717948,30	MCF-7	breast:
36	chr14:68419778..68421283-chr14:68658459..68660367,2	MCF-7	breast:
37	chr14:68549312..68551959-chr14:68656938..68660487,4	MCF-7	breast:
38	chr14:68658282..68660855-chr14:68673149..68675091,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000185650	Chromatin interaction
ENSG00000258820	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs10146929	1.00[AMR][1000 genomes]
rs10151522	1.00[AMR][1000 genomes]
rs17104818	1.00[AMR][1000 genomes]
rs28834533	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4902551	0.93[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869154	chr14:68366754-69041768	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:42 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:68642400-68659800	Weak transcription	Pancreas	Pancrea
2	chr14:68647000-68676600	Weak transcription	Primary B cells from cord blood	blood
3	chr14:68648600-68659600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
4	chr14:68649000-68659400	Weak transcription	HUES64 Cell Line	embryonic stem cell
5	chr14:68649400-68677000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr14:68649800-68660400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr14:68650000-68660800	Weak transcription	Sigmoid Colon	Sigmoid Colon
8	chr14:68651200-68675000	Weak transcription	Primary hematopoietic stem cells	blood
9	chr14:68655400-68662400	Enhancers	Fetal Intestine Small	intestine
10	chr14:68655600-68659400	Weak transcription	HUES48 Cell Line	embryonic stem cell
11	chr14:68655600-68659400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
12	chr14:68655600-68660000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
13	chr14:68655800-68659600	Weak transcription	HUES6 Cell Line	embryonic stem cell
14	chr14:68655800-68660000	Weak transcription	H9 Cell Line	embryonic stem cell
15	chr14:68655800-68661000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
16	chr14:68656800-68662600	Enhancers	HepG2	liver
17	chr14:68657200-68661400	Enhancers	Fetal Lung	lung
18	chr14:68657200-68661800	Enhancers	Liver	Liver
19	chr14:68657200-68662400	Enhancers	Pancreatic Islets	Pancreatic Islet
20	chr14:68657600-68659600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
21	chr14:68657800-68659600	Enhancers	Hela-S3	cervix
22	chr14:68657800-68662200	Enhancers	Colon Smooth Muscle	Colon
23	chr14:68657800-68662600	Enhancers	Stomach Mucosa	stomach
24	chr14:68658000-68659400	Enhancers	Rectal Mucosa Donor 29	rectum
25	chr14:68658000-68659400	Enhancers	HSMM	muscle
26	chr14:68658000-68660800	Enhancers	Small Intestine	intestine
27	chr14:68658000-68661200	Enhancers	Stomach Smooth Muscle	stomach
28	chr14:68658000-68661800	Enhancers	Fetal Kidney	kidney
29	chr14:68658000-68665000	Enhancers	Rectal Smooth Muscle	rectum
30	chr14:68658200-68659400	Enhancers	Muscle Satellite Cultured Cells	--
31	chr14:68658200-68659400	Enhancers	HSMMtube	muscle
32	chr14:68658200-68661200	Enhancers	Skeletal Muscle Female	skeletal muscle
33	chr14:68658400-68659600	Weak transcription	Duodenum Mucosa	Duodenum
34	chr14:68658400-68660200	Enhancers	Skeletal Muscle Male	skeletal muscle
35	chr14:68658600-68661200	Weak transcription	Fetal Muscle Leg	muscle
36	chr14:68658600-68661400	Enhancers	Duodenum Smooth Muscle	Duodenum
37	chr14:68658800-68662200	Enhancers	iPS-15b Cell Line	embryonic stem cell
38	chr14:68659000-68659800	Weak transcription	Psoas Muscle	Psoas
39	chr14:68659000-68660000	Flanking Active TSS	A549	lung
40	chr14:68659000-68663800	Weak transcription	Rectal Mucosa Donor 31	rectum
41	chr14:68659000-68666200	Weak transcription	Ovary	ovary
42	chr14:68659200-68661800	Enhancers	Fetal Intestine Large	intestine

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