Variant report

Variant	rs10146929
Chromosome Location	chr14:68561313-68561314
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10144531	1.00[AMR][1000 genomes]
rs10151522	1.00[ASW][hapmap];0.88[LWK][hapmap];0.81[MKK][hapmap];0.87[YRI][hapmap];0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13353140	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17104818	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28834533	1.00[AMR][1000 genomes]
rs35217922	1.00[EUR][1000 genomes]
rs7143425	1.00[EUR][1000 genomes]
rs7153799	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869154	chr14:68366754-69041768	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:68547200-68567400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr14:68556400-68568400	Weak transcription	Primary T cells from cord blood	blood
3	chr14:68556600-68561800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr14:68556600-68565400	Weak transcription	Primary hematopoietic stem cells	blood
5	chr14:68556600-68568000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr14:68557000-68561400	Weak transcription	Fetal Kidney	kidney
7	chr14:68557000-68562800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr14:68557000-68565600	Weak transcription	Fetal Lung	lung
9	chr14:68557200-68561400	Weak transcription	Colon Smooth Muscle	Colon
10	chr14:68557200-68561400	Weak transcription	Rectal Smooth Muscle	rectum
11	chr14:68561000-68562200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr14:68561200-68561600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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