Variant report

Variant	rs28834533
Chromosome Location	chr14:68569343-68569344
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:68569325..68572968-chr14:68576089..68579365,3	MCF-7	breast:
2	chr14:68559348..68562208-chr14:68567307..68571159,3	MCF-7	breast:
3	chr14:68569098..68575378-chr14:68600721..68608879,10	MCF-7	breast:

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs10144531	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10146929	1.00[AMR][1000 genomes]
rs10151522	1.00[AMR][1000 genomes]
rs13353140	1.00[AMR][1000 genomes]
rs17104818	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869154	chr14:68366754-69041768	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:68566400-68570000	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
2	chr14:68566600-68570800	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr14:68567600-68569800	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
4	chr14:68567600-68570000	ZNF genes & repeats	Fetal Intestine Small	intestine
5	chr14:68568200-68569400	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
6	chr14:68568400-68570000	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
7	chr14:68568800-68569400	Weak transcription	Rectal Smooth Muscle	rectum
8	chr14:68568800-68570000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
9	chr14:68568800-68571200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr14:68569000-68569400	Weak transcription	Aorta	Aorta
11	chr14:68569000-68569600	ZNF genes & repeats	Primary hematopoietic stem cells	blood
12	chr14:68569000-68570400	Weak transcription	Fetal Lung	lung
13	chr14:68569000-68571200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
14	chr14:68569000-68572600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
15	chr14:68569000-68576000	Weak transcription	Adipose Nuclei	Adipose
16	chr14:68569000-68578400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
17	chr14:68569200-68569400	Enhancers	Colon Smooth Muscle	Colon
18	chr14:68569200-68569800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
19	chr14:68569200-68570600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
20	chr14:68569200-68570600	Weak transcription	Osteobl	bone
21	chr14:68569200-68575800	Weak transcription	Primary T cells from cord blood	blood
22	chr14:68569200-68579200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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