Variant report
| Variant | rs4902908 |
|---|---|
| Chromosome Location | chr14:71645196-71645197 |
| allele | A/C |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr14:71643231..71645889-chr14:72138458..72140517,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:61)
| rs_ID | r2[population] |
|---|---|
| rs10140218 | 1.00[ASN][1000 genomes] |
| rs11623477 | 1.00[ASN][1000 genomes] |
| rs11844339 | 1.00[ASN][1000 genomes] |
| rs17766986 | 1.00[ASN][1000 genomes] |
| rs45498105 | 1.00[ASN][1000 genomes] |
| rs45517434 | 1.00[ASN][1000 genomes] |
| rs4902905 | 0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs55896578 | 1.00[ASN][1000 genomes] |
| rs57204407 | 1.00[ASN][1000 genomes] |
| rs57723945 | 1.00[ASN][1000 genomes] |
| rs58952176 | 1.00[ASN][1000 genomes] |
| rs59060154 | 1.00[ASN][1000 genomes] |
| rs61988736 | 1.00[ASN][1000 genomes] |
| rs61988737 | 1.00[ASN][1000 genomes] |
| rs61988738 | 1.00[ASN][1000 genomes] |
| rs61988740 | 1.00[ASN][1000 genomes] |
| rs61989175 | 0.86[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs61989177 | 0.86[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs61989179 | 0.93[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs61989180 | 0.93[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs61989234 | 1.00[ASN][1000 genomes] |
| rs61989239 | 1.00[ASN][1000 genomes] |
| rs61989240 | 1.00[ASN][1000 genomes] |
| rs61990375 | 1.00[ASN][1000 genomes] |
| rs61990382 | 1.00[ASN][1000 genomes] |
| rs61990383 | 1.00[ASN][1000 genomes] |
| rs61990384 | 1.00[ASN][1000 genomes] |
| rs61990385 | 1.00[ASN][1000 genomes] |
| rs61990404 | 1.00[ASN][1000 genomes] |
| rs61990406 | 1.00[ASN][1000 genomes] |
| rs61990407 | 1.00[ASN][1000 genomes] |
| rs61990408 | 1.00[ASN][1000 genomes] |
| rs61990409 | 1.00[ASN][1000 genomes] |
| rs61990410 | 1.00[ASN][1000 genomes] |
| rs61990411 | 1.00[ASN][1000 genomes] |
| rs61990412 | 1.00[ASN][1000 genomes] |
| rs61990414 | 1.00[ASN][1000 genomes] |
| rs61990416 | 1.00[ASN][1000 genomes] |
| rs61990417 | 1.00[ASN][1000 genomes] |
| rs61990418 | 1.00[ASN][1000 genomes] |
| rs61990420 | 1.00[ASN][1000 genomes] |
| rs61990451 | 1.00[ASN][1000 genomes] |
| rs61990452 | 1.00[ASN][1000 genomes] |
| rs61990453 | 1.00[ASN][1000 genomes] |
| rs61990458 | 1.00[ASN][1000 genomes] |
| rs61992061 | 1.00[ASN][1000 genomes] |
| rs61992066 | 1.00[ASN][1000 genomes] |
| rs61992068 | 1.00[ASN][1000 genomes] |
| rs61992069 | 1.00[ASN][1000 genomes] |
| rs61992070 | 1.00[ASN][1000 genomes] |
| rs61992080 | 1.00[ASN][1000 genomes] |
| rs61992081 | 1.00[ASN][1000 genomes] |
| rs61992086 | 1.00[ASN][1000 genomes] |
| rs61992088 | 1.00[ASN][1000 genomes] |
| rs61992090 | 1.00[ASN][1000 genomes] |
| rs61992091 | 0.86[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7155259 | 1.00[ASN][1000 genomes] |
| rs7156194 | 1.00[ASN][1000 genomes] |
| rs7159252 | 1.00[ASN][1000 genomes] |
| rs7160587 | 1.00[ASN][1000 genomes] |
| rs7492426 | 1.00[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1041980 | chr14:71196358-71767339 | Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Enhancers Strong transcription Bivalent Enhancer Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 35 gene(s) | inside rSNPs | diseases |
| 2 | nsv542125 | chr14:71196358-71767339 | Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Enhancers Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 35 gene(s) | inside rSNPs | diseases |
| 3 | nsv1038007 | chr14:71269747-71667680 | Weak transcription Enhancers Genic enhancers Active TSS Strong transcription Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 25 gene(s) | inside rSNPs | diseases |
| 4 | nsv1036929 | chr14:71469148-71683412 | Strong transcription Genic enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Enhancers Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 12 gene(s) | inside rSNPs | diseases |
| 5 | nsv1044090 | chr14:71496198-71780026 | Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 22 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr14:71633400-71648000 | Weak transcription | H1 BMP4 Derived Trophoblast Cultured Cells | ES cell derived |
| 2 | chr14:71634600-71648200 | Weak transcription | iPS DF 19.11 Cell Line | embryonic stem cell |
| 3 | chr14:71638600-71654600 | Weak transcription | Pancreas | Pancrea |
| 4 | chr14:71642400-71648200 | Weak transcription | Breast variant Human Mammary Epithelial Cells (vHMEC) | Breast |
| 5 | chr14:71643600-71645800 | Weak transcription | Breast Myoepithelial Primary Cells | Breast |
