Variant report

Variant	rs55896578
Chromosome Location	chr14:71712185-71712186
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:71711940..71713445-chr14:71722921..71725630,2	MCF-7	breast:
2	chr14:71711268..71712852-chr14:71785240..71787299,2	MCF-7	breast:
3	chr14:71710210..71712589-chr14:71742927..71745344,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000197555	Chromatin interaction

Extended variants
information (count: 62 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:58)

rs_ID	r²[population]
rs11623477	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11626886	0.82[EUR][1000 genomes]
rs11844339	1.00[ASN][1000 genomes]
rs17767362	0.82[EUR][1000 genomes]
rs2108708	0.82[EUR][1000 genomes]
rs45517434	1.00[ASN][1000 genomes]
rs4902905	1.00[ASN][1000 genomes]
rs4902908	1.00[ASN][1000 genomes]
rs55863348	0.82[EUR][1000 genomes]
rs57204407	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57723945	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58952176	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59060154	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61989175	1.00[ASN][1000 genomes]
rs61989177	1.00[ASN][1000 genomes]
rs61989179	1.00[ASN][1000 genomes]
rs61989180	1.00[ASN][1000 genomes]
rs61989234	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61989239	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61989240	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61989244	0.84[EUR][1000 genomes]
rs61989252	0.82[EUR][1000 genomes]
rs61989255	0.82[EUR][1000 genomes]
rs61989256	0.82[EUR][1000 genomes]
rs61989259	0.82[EUR][1000 genomes]
rs61990406	1.00[ASN][1000 genomes]
rs61990407	1.00[ASN][1000 genomes]
rs61990408	1.00[ASN][1000 genomes]
rs61990409	1.00[ASN][1000 genomes]
rs61990410	1.00[ASN][1000 genomes]
rs61990411	1.00[ASN][1000 genomes]
rs61990412	1.00[ASN][1000 genomes]
rs61990414	1.00[ASN][1000 genomes]
rs61990416	1.00[ASN][1000 genomes]
rs61990417	1.00[ASN][1000 genomes]
rs61990418	1.00[ASN][1000 genomes]
rs61990420	1.00[ASN][1000 genomes]
rs61990451	1.00[ASN][1000 genomes]
rs61990452	1.00[ASN][1000 genomes]
rs61990453	1.00[ASN][1000 genomes]
rs61990458	1.00[ASN][1000 genomes]
rs61992061	1.00[ASN][1000 genomes]
rs61992066	1.00[ASN][1000 genomes]
rs61992068	1.00[ASN][1000 genomes]
rs61992069	1.00[ASN][1000 genomes]
rs61992070	1.00[ASN][1000 genomes]
rs61992080	1.00[ASN][1000 genomes]
rs61992081	1.00[ASN][1000 genomes]
rs61992086	1.00[ASN][1000 genomes]
rs61992088	1.00[ASN][1000 genomes]
rs61992090	1.00[ASN][1000 genomes]
rs61992091	1.00[ASN][1000 genomes]
rs7155259	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7156194	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7159252	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7160587	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72728406	0.82[EUR][1000 genomes]
rs7492426	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1041980	chr14:71196358-71767339	Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Enhancers Strong transcription Bivalent Enhancer Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
2	nsv542125	chr14:71196358-71767339	Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Enhancers Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
3	nsv1044090	chr14:71496198-71780026	Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
4	nsv832827	chr14:71676178-71833519	Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:71704600-71713200	Weak transcription	Thymus	Thymus
2	chr14:71706800-71713000	Enhancers	Fetal Muscle Leg	muscle
3	chr14:71707600-71712200	Weak transcription	Fetal Thymus	thymus
4	chr14:71707600-71713000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr14:71707800-71712200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr14:71708000-71712400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr14:71708200-71712200	Enhancers	NHDF-Ad	bronchial
8	chr14:71708200-71713400	Weak transcription	NHEK	skin
9	chr14:71708600-71712200	Weak transcription	Spleen	Spleen
10	chr14:71709000-71715200	Weak transcription	Fetal Brain Male	brain
11	chr14:71709200-71712200	Enhancers	Osteobl	bone
12	chr14:71709400-71712200	Weak transcription	Right Atrium	heart
13	chr14:71709400-71713200	Weak transcription	HUVEC	blood vessel
14	chr14:71709600-71717800	Weak transcription	Fetal Lung	lung
15	chr14:71709800-71712200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
16	chr14:71710400-71712200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
17	chr14:71711400-71712600	Weak transcription	Aorta	Aorta
18	chr14:71711600-71714000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr14:71711600-71714800	Weak transcription	Muscle Satellite Cultured Cells	--
20	chr14:71711600-71714800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
21	chr14:71711800-71714800	Weak transcription	Fetal Heart	heart
22	chr14:71712000-71714000	Enhancers	Primary B cells from peripheral blood	blood
23	chr14:71712000-71714000	Enhancers	Primary T cells from cord blood	blood
24	chr14:71712000-71714000	Enhancers	Primary T helper cells fromperipheralblood	blood
25	chr14:71712000-71714000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
26	chr14:71712000-71714200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
27	chr14:71712000-71714200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
28	chr14:71712000-71714400	Enhancers	Primary T helper 17 cells PMA-I stimulated	--

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