Variant report

Variant	rs61992090
Chromosome Location	chr14:71614386-71614387
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	RAD21	chr14:71614079-71614453	H1-hESC	embryonic stem cell:	n/a	n/a
2	EBF1	chr14:71614135-71614481	GM12878	blood:	n/a	n/a
3	PAX5	chr14:71614150-71614601	GM12878	blood:	n/a	n/a
4	CTCF	chr14:71614035-71614418	K562	blood:	n/a	n/a
5	PAX5	chr14:71614131-71614433	GM12878	blood:	n/a	n/a
6	CTCF	chr14:71614026-71614414	A549	lung:	n/a	n/a
7	CTCF	chr14:71613976-71614502	K562	blood:	n/a	n/a
8	CTCF	chr14:71614128-71614418	A549	lung:	n/a	n/a
9	FOSL2	chr14:71614131-71614411	HepG2	liver:	n/a	n/a
10	EBF1	chr14:71614127-71614413	GM12878	blood:	n/a	n/a
11	PAX5	chr14:71614136-71614490	GM12878	blood:	n/a	n/a

Variant related genes	Relation type
ENSG00000269927	TF binding region

Extended variants
information (count: 78 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:68)

rs_ID	r²[population]
rs10140218	1.00[ASN][1000 genomes]
rs11623477	1.00[ASN][1000 genomes]
rs11844339	1.00[ASN][1000 genomes]
rs17766986	1.00[ASN][1000 genomes]
rs45498105	1.00[ASN][1000 genomes]
rs45517434	1.00[ASN][1000 genomes]
rs4902905	1.00[ASN][1000 genomes]
rs4902908	1.00[ASN][1000 genomes]
rs55896578	1.00[ASN][1000 genomes]
rs57204407	1.00[ASN][1000 genomes]
rs57723945	1.00[ASN][1000 genomes]
rs58952176	1.00[ASN][1000 genomes]
rs59060154	1.00[ASN][1000 genomes]
rs61988726	1.00[ASN][1000 genomes]
rs61988727	1.00[ASN][1000 genomes]
rs61988728	1.00[ASN][1000 genomes]
rs61988729	1.00[ASN][1000 genomes]
rs61988735	1.00[ASN][1000 genomes]
rs61988736	1.00[ASN][1000 genomes]
rs61988737	1.00[ASN][1000 genomes]
rs61988738	1.00[ASN][1000 genomes]
rs61988740	1.00[ASN][1000 genomes]
rs61989175	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61989177	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61989179	1.00[ASN][1000 genomes]
rs61989180	1.00[ASN][1000 genomes]
rs61989234	1.00[ASN][1000 genomes]
rs61989239	1.00[ASN][1000 genomes]
rs61989240	1.00[ASN][1000 genomes]
rs61990375	1.00[ASN][1000 genomes]
rs61990382	1.00[ASN][1000 genomes]
rs61990383	1.00[ASN][1000 genomes]
rs61990384	1.00[ASN][1000 genomes]
rs61990385	1.00[ASN][1000 genomes]
rs61990404	1.00[ASN][1000 genomes]
rs61990406	1.00[ASN][1000 genomes]
rs61990407	1.00[ASN][1000 genomes]
rs61990408	1.00[ASN][1000 genomes]
rs61990409	1.00[ASN][1000 genomes]
rs61990410	1.00[ASN][1000 genomes]
rs61990411	1.00[ASN][1000 genomes]
rs61990412	1.00[ASN][1000 genomes]
rs61990414	1.00[ASN][1000 genomes]
rs61990416	1.00[ASN][1000 genomes]
rs61990417	1.00[ASN][1000 genomes]
rs61990418	1.00[ASN][1000 genomes]
rs61990420	1.00[ASN][1000 genomes]
rs61990421	0.82[EUR][1000 genomes]
rs61990445	0.82[EUR][1000 genomes]
rs61990451	1.00[ASN][1000 genomes]
rs61990452	1.00[ASN][1000 genomes]
rs61990453	1.00[ASN][1000 genomes]
rs61990458	1.00[ASN][1000 genomes]
rs61992061	1.00[ASN][1000 genomes]
rs61992066	1.00[ASN][1000 genomes]
rs61992068	1.00[ASN][1000 genomes]
rs61992069	1.00[ASN][1000 genomes]
rs61992070	1.00[ASN][1000 genomes]
rs61992080	1.00[ASN][1000 genomes]
rs61992081	1.00[ASN][1000 genomes]
rs61992086	1.00[ASN][1000 genomes]
rs61992088	1.00[ASN][1000 genomes]
rs61992091	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7155259	1.00[ASN][1000 genomes]
rs7156194	1.00[ASN][1000 genomes]
rs7159252	1.00[ASN][1000 genomes]
rs7160587	1.00[ASN][1000 genomes]
rs7492426	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1041980	chr14:71196358-71767339	Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Enhancers Strong transcription Bivalent Enhancer Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
2	nsv542125	chr14:71196358-71767339	Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Enhancers Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
3	nsv1035416	chr14:71212882-71623271	Strong transcription Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
4	nsv542126	chr14:71212882-71623271	Weak transcription Enhancers Strong transcription Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
5	nsv1037839	chr14:71263886-71625114	Flanking Active TSS Weak transcription Genic enhancers Active TSS Strong transcription Enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
6	nsv542127	chr14:71263886-71625114	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
7	nsv1038007	chr14:71269747-71667680	Weak transcription Enhancers Genic enhancers Active TSS Strong transcription Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
8	nsv565043	chr14:71395604-71625112	Strong transcription Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
9	nsv1036929	chr14:71469148-71683412	Strong transcription Genic enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Enhancers Bivalent Enhancer Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
10	nsv1044090	chr14:71496198-71780026	Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:71606600-71614800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr14:71610200-71615000	Weak transcription	Fetal Thymus	thymus
3	chr14:71610600-71615200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
4	chr14:71610600-71615400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
5	chr14:71610800-71615400	Weak transcription	Primary T cells from cord blood	blood
6	chr14:71610800-71615400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
7	chr14:71610800-71615400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
8	chr14:71611000-71615000	Weak transcription	Dnd41	blood
9	chr14:71613200-71615200	Weak transcription	Primary neutrophils fromperipheralblood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links