Variant report

Variant	rs61989259
Chromosome Location	chr14:71733506-71733507
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:71731979..71733968-chr14:71736696..71738464,2	MCF-7	breast:
2	chr1:151998303..152000885-chr14:71732498..71734961,2	MCF-7	breast:

Extended variants
information (count: 98 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:94)

rs_ID	r²[population]
rs11620632	0.85[EUR][1000 genomes]
rs11623477	0.83[EUR][1000 genomes]
rs11626886	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11626990	0.84[EUR][1000 genomes]
rs11627918	0.87[EUR][1000 genomes]
rs11845249	0.85[EUR][1000 genomes]
rs11849508	0.85[EUR][1000 genomes]
rs12881643	0.83[EUR][1000 genomes]
rs12894478	0.83[EUR][1000 genomes]
rs17178045	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17767362	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17767380	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17767386	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs17767392	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17767410	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17767446	0.83[EUR][1000 genomes]
rs17767499	0.83[EUR][1000 genomes]
rs1990241	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2108707	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2108708	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2159145	0.85[EUR][1000 genomes]
rs34011442	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs34524083	0.83[EUR][1000 genomes]
rs34528013	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs34528131	0.83[EUR][1000 genomes]
rs34533948	0.90[AMR][1000 genomes];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs34649709	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs34674149	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs34725136	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs34746156	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs34748537	0.83[EUR][1000 genomes]
rs34767050	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs34873919	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs34957192	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs35051046	0.83[EUR][1000 genomes]
rs35054229	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs35094946	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs35122644	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs35260692	0.83[EUR][1000 genomes]
rs35468256	0.83[EUR][1000 genomes]
rs35621718	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs35692397	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs35796129	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs35822724	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs35854505	0.83[EUR][1000 genomes]
rs36057816	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs36093218	0.81[EUR][1000 genomes]
rs4902928	0.85[EUR][1000 genomes]
rs55851052	0.88[AFR][1000 genomes];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs55863348	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs55896578	0.82[EUR][1000 genomes]
rs56363446	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs57204407	0.80[EUR][1000 genomes]
rs58952176	0.80[EUR][1000 genomes]
rs59697713	0.85[EUR][1000 genomes]
rs61989240	0.82[EUR][1000 genomes]
rs61989244	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs61989245	0.84[EUR][1000 genomes]
rs61989246	0.86[EUR][1000 genomes]
rs61989247	0.84[EUR][1000 genomes]
rs61989250	0.85[EUR][1000 genomes]
rs61989252	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs61989255	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs61989256	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs61989257	0.85[EUR][1000 genomes]
rs61991192	0.85[EUR][1000 genomes]
rs61991193	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61991195	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs61991199	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs61991201	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs61991202	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs61991203	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs61991204	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs61991205	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs61991247	0.83[EUR][1000 genomes]
rs61991248	0.83[EUR][1000 genomes]
rs61991250	0.83[EUR][1000 genomes]
rs68073803	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7140354	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7142180	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7145755	0.83[EUR][1000 genomes]
rs7147434	0.83[EUR][1000 genomes]
rs7147668	0.83[EUR][1000 genomes]
rs7156460	0.83[EUR][1000 genomes]
rs7159252	0.80[EUR][1000 genomes]
rs7160460	0.85[EUR][1000 genomes]
rs7160587	0.80[EUR][1000 genomes]
rs723966	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs72726701	0.85[EUR][1000 genomes]
rs72726702	0.85[EUR][1000 genomes]
rs72728403	0.85[EUR][1000 genomes]
rs72728406	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72728427	0.90[AMR][1000 genomes];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs8007068	0.90[AMR][1000 genomes];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1041980	chr14:71196358-71767339	Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Enhancers Strong transcription Bivalent Enhancer Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
2	nsv542125	chr14:71196358-71767339	Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Enhancers Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
3	nsv1044090	chr14:71496198-71780026	Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
4	nsv832827	chr14:71676178-71833519	Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:71729400-71733600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
2	chr14:71729600-71734000	Weak transcription	Osteobl	bone
3	chr14:71731200-71733600	Weak transcription	Hela-S3	cervix

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